[med-svn] [Git][med-team/pbbarcode][master] 7 commits: debhelper 11
Andreas Tille
gitlab at salsa.debian.org
Wed Oct 31 07:14:12 GMT 2018
Andreas Tille pushed to branch master at Debian Med / pbbarcode
Commits:
804ac8e8 by Andreas Tille at 2018-10-31T07:06:39Z
debhelper 11
- - - - -
b942044e by Andreas Tille at 2018-10-31T07:07:20Z
Point Vcs fields to salsa.debian.org
- - - - -
3a3ceb44 by Andreas Tille at 2018-10-31T07:07:20Z
Standards-Version: 4.2.1
- - - - -
52528275 by Andreas Tille at 2018-10-31T07:07:21Z
Secure URI in copyright format
- - - - -
e3e4070c by Andreas Tille at 2018-10-31T07:07:56Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
- - - - -
e10f2d53 by Andreas Tille at 2018-10-31T07:07:56Z
Remove trailing whitespace in debian/copyright
- - - - -
0aa52542 by Andreas Tille at 2018-10-31T07:09:52Z
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+pbbarcode (0.8.0-5) unstable; urgency=medium
+
+ * Team upload.
+ * debhelper 11
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.2.1
+ * Secure URI in copyright format
+ * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+ * Remove trailing whitespace in debian/copyright
+
+ -- Andreas Tille <tille at debian.org> Wed, 31 Oct 2018 08:07:56 +0100
+
pbbarcode (0.8.0-4) unstable; urgency=medium
* Team upload
=====================================
debian/compat
=====================================
@@ -1 +1 @@
-10
+11
=====================================
debian/control
=====================================
@@ -3,32 +3,29 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Afif Elghraoui <afif at debian.org>
Section: science
Priority: optional
-Build-Depends:
- debhelper (>= 10),
- dh-python,
- python-setuptools,
- python3-docutils,
- python-all-dev,
- python-pbcore,
- python-numpy,
- python-h5py,
+Build-Depends: debhelper (>= 11~),
+ dh-python,
+ python-setuptools,
+ python3-docutils,
+ python-all-dev,
+ python-pbcore,
+ python-numpy,
+ python-h5py,
# Test-Depends:
- python-nose,
- pbh5tools,
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbbarcode.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/pbbarcode.git
+ python-nose,
+ pbh5tools
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/pbbarcode
+Vcs-Git: https://salsa.debian.org/med-team/pbbarcode.git
Homepage: https://github.com/PacificBiosciences/pbbarcode
Package: pbbarcode
Architecture: any
-Depends:
- ${misc:Depends},
- ${shlibs:Depends},
- ${python:Depends},
- python-pkg-resources,
-Suggests:
- pbdagcon,
+Depends: ${misc:Depends},
+ ${shlibs:Depends},
+ ${python:Depends},
+ python-pkg-resources
+Suggests: pbdagcon
Description: annotate PacBio sequencing reads with barcode information
The pbbarcode package provides tools for annotating PacBio sequencing reads
with barcode information. Typically, pbbarcode is called in context of a
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pbbarcode
Upstream-Contact: Pacific Biosciences <devnet at pacificbiosciences.com>
Source: https://github.com/PacificBiosciences/pbbarcode
@@ -12,7 +12,7 @@ Copyright: 2015-2016 Afif Elghraoui <afif at debian.org>
License: PacBio-BSD-3-Clause
License: PacBio-BSD-3-Clause
- Redistribution and use in source and binary forms, with or without
+ Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
@@ -23,14 +23,14 @@ License: PacBio-BSD-3-Clause
contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
.
- THIS SOFTWARE IS PROVIDED BY PACIFIC BIOSCIENCES AND ITS CONTRIBUTORS
- "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
- TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
- PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
- CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
- EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ THIS SOFTWARE IS PROVIDED BY PACIFIC BIOSCIENCES AND ITS CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+ TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=====================================
debian/rules
=====================================
@@ -12,9 +12,11 @@ PYBUILD_NAME = pbbarcode
LC_ALL=C.UTF-8 dh $@ --with python2 --buildsystem=pybuild
override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="find tests -name '*.py' | xargs nosetests -v" \
dh_auto_test
+endif
override_dh_install:
mkdir -p debian/$(DEB_SOURCE)/usr/share/man/man1
View it on GitLab: https://salsa.debian.org/med-team/pbbarcode/compare/2190d20571ac86af6936d03e1d25cab3190ba57b...0aa52542be7652e34a3e262fa0cccb01c7e49f3b
--
View it on GitLab: https://salsa.debian.org/med-team/pbbarcode/compare/2190d20571ac86af6936d03e1d25cab3190ba57b...0aa52542be7652e34a3e262fa0cccb01c7e49f3b
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