[med-svn] [Git][med-team/pbbam][master] 2 commits: Fix broken PATH

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbbam


Commits:
27a60c48 by Andreas Tille at 2018-09-06T06:41:03Z
Fix broken PATH

- - - - -
c1f1472d by Andreas Tille at 2018-09-06T09:17:02Z
Really fix broken command line

- - - - -


1 changed file:

- debian/rules


Changes:

=====================================
debian/rules
=====================================
@@ -27,6 +27,9 @@ override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
 	python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
 	# remove dfsg extension from test cases
 	sed -i -e 's/+dfsg//g' -e 's?\(/build/$(DEB_SOURCE)-[0-9.]\+\)/?\1+dfsg/?' tests/src/cram/*
+	# Fix broken PATH
+	synthetic_movie_all_path=`find $$PWD -name synthetic_movie_all.subreadset.xml` ; \
+	sed -i -e "s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?$${synthetic_movie_all_path}?" tests/src/cram/pbbamify*
 	BINDIR=`dirname $$(find $$PWD -name pbmerge -type f -executable)`; \
 	LIBDIR=`find $$PWD -name lib -type d`; \
 	PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \



View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/74e5e404c02c35bc412d5b5e1baf5bca8edb39b6...c1f1472da5dd9df47113ec3db320919edaef93b3

-- 
View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/74e5e404c02c35bc412d5b5e1baf5bca8edb39b6...c1f1472da5dd9df47113ec3db320919edaef93b3
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180906/048ca685/attachment.html>