[med-svn] [Git][med-team/pbbam][master] 5 commits: DEP3
Andreas Tille
gitlab at salsa.debian.org
Thu Sep 6 13:39:53 BST 2018
Andreas Tille pushed to branch master at Debian Med / pbbam
Commits:
eb33a6d6 by Andreas Tille at 2018-09-06T11:52:03Z
DEP3
- - - - -
bf39bf82 by Andreas Tille at 2018-09-06T12:27:26Z
Remove paragraph with removed files
- - - - -
f21b69b1 by Andreas Tille at 2018-09-06T12:28:33Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test
- - - - -
9e07afdc by Andreas Tille at 2018-09-06T12:29:30Z
hardening=+all
- - - - -
bebb3060 by Andreas Tille at 2018-09-06T12:39:17Z
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/copyright
- debian/patches/fix_gtest_depcheck.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-pbbam (0.18.0+dfsg-1) UNRELEASED; urgency=medium
+pbbam (0.18.0+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
@@ -10,11 +10,13 @@ pbbam (0.18.0+dfsg-1) UNRELEASED; urgency=medium
* Standards-Version: 4.2.1
* Use d-shlibs
* Remove unneeded trigger
+ * Respect DEB_BUILD_OPTIONS in override_dh_auto_test
+ * hardening=+all
[ Fabian Kloetzl ]
* fix dependency check for meson
- -- Andreas Tille <tille at debian.org> Tue, 21 Aug 2018 21:31:37 +0200
+ -- Andreas Tille <tille at debian.org> Thu, 06 Sep 2018 14:29:53 +0200
pbbam (0.7.4+ds-1) unstable; urgency=medium
=====================================
debian/copyright
=====================================
@@ -9,16 +9,6 @@ Files: *
Copyright: 2014-2016 Pacific Biosciences of California, Inc. <devnet at pacificbiosciences.com>
License: PacBio-BSD-3-Clause
-Files: cmake/FindCSharp.cmake
- cmake/FindMono.cmake
- cmake/UseCSharp.cmake
- cmake/UseDotNetFrameworkSdk.cmake
- cmake/UseMono.cmake
-Copyright: 2006-2010 Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Comment: These files are from GDCM (as indicated in the file headers).
- The license terms have been retrieved from there.
-License: MM-BSD-3-Clause
-
Files: src/pugixml/*
Copyright: 2006-2014 Arseny Kapoulkine <arseny.kapoulkine at gmail.com>
2003 Kristen Wegner <kristen at tima.net>
@@ -61,30 +51,6 @@ License: PacBio-BSD-3-Clause
OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
SUCH DAMAGE.
-License: MM-BSD-3-clause
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
- 1. Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
- 2. Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
- 3. Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
- contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
- endorse or promote products derived from this software without specific
- prior written permission.
- .
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
- ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
- DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
- OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
- OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
License: BSD-3-Clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
=====================================
debian/patches/fix_gtest_depcheck.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Andreas Tille, Fabian Klötzl
+Last-Update: 2018-09-05 14:50:07 +0000
+Description: Use Debian packaged gtest
+
--- a/tests/meson.build
+++ b/tests/meson.build
@@ -6,7 +6,7 @@ if not pbbam_cram_script.found()
=====================================
debian/rules
=====================================
@@ -4,6 +4,8 @@
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
DEB_VERSION_UPSTREAM := $(subst +ds,,$(DEB_VERSION_UPSTREAM))
generated_data_dir = $(CURDIR)/gendata
@@ -23,6 +25,7 @@ generated_data_dir = $(CURDIR)/gendata
## -DPacBioBAM_wrap_r=ON
override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
mkdir -p $(generated_data_dir)
python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
# Fix broken PATH
@@ -32,6 +35,7 @@ override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
LIBDIR=`find $$PWD -name lib -type d`; \
PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \
cram -v $^
+endif
override_dh_installchangelogs:
dh_installchangelogs CHANGELOG.md
View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/7ee473fe6b0d840b1fc3b4ccc7ce4a0713962dd3...bebb30604c1b1cd2fec217641e835e68f4ec453f
--
View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/7ee473fe6b0d840b1fc3b4ccc7ce4a0713962dd3...bebb30604c1b1cd2fec217641e835e68f4ec453f
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