[med-svn] [Git][med-team/sra-sdk][master] 4 commits: New upstream version 2.9.2+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / sra-sdk


Commits:
aac8545b by Andreas Tille at 2018-09-10T06:24:02Z
New upstream version 2.9.2+dfsg
- - - - -
c4b84d6a by Andreas Tille at 2018-09-10T06:24:12Z
Update upstream source from tag 'upstream/2.9.2+dfsg'

Update to upstream version '2.9.2+dfsg'
with Debian dir cd68f85f63957545b375597d898edcbdd78808c0
- - - - -
774651a2 by Andreas Tille at 2018-09-10T06:24:46Z
New upstream version

- - - - -
fd914b27 by Andreas Tille at 2018-09-10T06:25:36Z
Standards-Version: 4.2.1

- - - - -


7 changed files:

- CHANGES.md
- build/Makefile.vers
- debian/changelog
- debian/control
- shared/toolkit.vers
- shared/toolkit.vers.h
- tools/bam-loader/loader-imp.c


Changes:

=====================================
CHANGES.md
=====================================
@@ -1,5 +1,15 @@
 # NCBI External Developer Release:
 
+## SRA Toolkit 2.9.2
+**July 23, 2018**
+  **kfg, vfs**: Introduced enhanced handling of download-only NGC files that lack read/decrypt permissions
+
+
+## SRA Toolkit 2.9.1-2
+**July 17, 2018**
+
+  **bam-load**: fixed a bug preventing early termination on error
+
 
 ## SRA Toolkit 2.9.1-1
 **June 26, 2018**


=====================================
build/Makefile.vers
=====================================
@@ -23,4 +23,4 @@
 # ===========================================================================
 
 # SRA-TOOLS and library version
-VERSION = 2.9.1
+VERSION = 2.9.2


=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+sra-sdk (2.9.2+dfsg-1) UNRELEASED; urgency=medium
+
+  * New upstream version
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille <tille at debian.org>  Mon, 10 Sep 2018 08:24:17 +0200
+
 sra-sdk (2.9.1-1+dfsg-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~),
                libmagic-dev,
                libxml2-dev,
                python
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/sra-sdk
 Vcs-Git: https://salsa.debian.org/med-team/sra-sdk.git
 Homepage: https://github.com/ncbi/sra-tools/


=====================================
shared/toolkit.vers
=====================================
@@ -1 +1 @@
-2.9.1
+2.9.2


=====================================
shared/toolkit.vers.h
=====================================
@@ -1 +1 @@
-#define TOOLKIT_VERS 0x02090001
+#define TOOLKIT_VERS 0x02090002


=====================================
tools/bam-loader/loader-imp.c
=====================================
@@ -2622,6 +2622,8 @@ WRITE_ALIGNMENT:
             break;
         if (rc == 0)
             *had_sequences = true;
+        else
+            break;
     }
     if (bamread_thread != NULL && bamq != NULL) {
         KQueueSeal(bamq);



View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/compare/fd79fe1ba99baf455b9332bffd7903242384a7d6...fd914b2778858642ba4626cd005f6d490546683d

-- 
View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/compare/fd79fe1ba99baf455b9332bffd7903242384a7d6...fd914b2778858642ba4626cd005f6d490546683d
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