[med-svn] [Git][med-team/python-pysam][master] 5 commits: Adjustments

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / python-pysam


Commits:
ccef4ca2 by Steffen Moeller at 2018-09-14T11:32:32Z
Adjustments

- - - - -
9099420a by Steffen Moeller at 2018-09-14T11:32:48Z
Merge branch 'master' of salsa.debian.org:med-team/python-pysam

- - - - -
92ad28b6 by Steffen Moeller at 2018-09-14T12:32:15Z
Merge branch 'master' of salsa.debian.org:med-team/python-pysam

- - - - -
8f48c352 by Steffen Moeller at 2018-09-14T13:04:10Z
Giving up for the moment - something deletes this file

- - - - -
75779a9f by Steffen Moeller at 2018-09-14T20:47:07Z
Team upload - avoiding lintian warning

- - - - -


3 changed files:

- debian/changelog
- debian/patches/series
- debian/patches/skip_test_needing_missing_data.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,6 @@
-python-pysam (0.15.1+ds-1) UNRELEASED; urgency=medium
+python-pysam (0.15.1+ds-1) unstable; urgency=medium
+
+  * Team upload.
 
   * New upstream version.
     - Removes autogenerated config.h - [many thanks!]


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,2 @@
 skip_test_remote.patch
-#skip_test_needing_missing_data.patch
+skip_test_needing_missing_data.patch


=====================================
debian/patches/skip_test_needing_missing_data.patch
=====================================
@@ -8,7 +8,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
 ===================================================================
 --- python-pysam.orig/tests/AlignmentFile_test.py
 +++ python-pysam/tests/AlignmentFile_test.py
-@@ -1403,12 +1403,7 @@ class TestEmptyHeader(unittest.TestCase)
+@@ -1402,11 +1402,6 @@ class TestEmptyHeader(unittest.TestCase)
                                               'example_empty_header.bam'))
          self.assertEqual(s.header.to_dict(), {'SQ': [{'LN': 1000, 'SN': 'chr1'}]})
  
@@ -16,8 +16,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
 -        s = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "example_no_seq_in_header.bam"))
 -        self.assertTrue("SQ" in s.header.to_dict())
 -        self.assertTrue("@SQ" in str(s.header))
+-
  
--        
- class TestHeaderWithProgramOptions(unittest.TestCase):
- 
-     '''see issue 39.'''
+ class TestMismatchingHeader(unittest.TestCase):
+     '''see issue 716.'''



View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/07dd508c5a5c866fbe438fe546c2178ae7762abe...75779a9f8054ec45e17dfdfb637e311333ad9036

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pysam/compare/07dd508c5a5c866fbe438fe546c2178ae7762abe...75779a9f8054ec45e17dfdfb637e311333ad9036
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180914/be36c821/attachment-0001.html>