[med-svn] [Git][med-team/htsjdk][upstream] New upstream version 2.16.1+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / htsjdk


Commits:
5c5e2f76 by Andreas Tille at 2018-09-17T14:00:42Z
New upstream version 2.16.1+dfsg
- - - - -


30 changed files:

- .travis.yml
- build.gradle
- gradle/wrapper/gradle-wrapper.properties
- gradlew
- src/main/java/htsjdk/samtools/BAMFileWriter.java
- src/main/java/htsjdk/samtools/BAMRecord.java
- src/main/java/htsjdk/samtools/BAMRecordCodec.java
- src/main/java/htsjdk/samtools/BamFileIoUtils.java
- src/main/java/htsjdk/samtools/BinaryBAMIndexWriter.java
- src/main/java/htsjdk/samtools/CRAMFileReader.java
- src/main/java/htsjdk/samtools/CRAMFileWriter.java
- src/main/java/htsjdk/samtools/CachingBAMFileIndex.java
- src/main/java/htsjdk/samtools/Defaults.java
- src/main/java/htsjdk/samtools/SAMBinaryTagAndValue.java
- src/main/java/htsjdk/samtools/SAMFileWriterFactory.java
- src/main/java/htsjdk/samtools/SAMFileWriterImpl.java
- src/main/java/htsjdk/samtools/SAMRecord.java
- src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java
- src/main/java/htsjdk/samtools/SAMTag.java
- src/main/java/htsjdk/samtools/SAMTagUtil.java
- src/main/java/htsjdk/samtools/SAMTextWriter.java
- src/main/java/htsjdk/samtools/SAMUtils.java
- src/main/java/htsjdk/samtools/SAMValidationError.java
- src/main/java/htsjdk/samtools/SamFileValidator.java
- src/main/java/htsjdk/samtools/SamFiles.java
- src/main/java/htsjdk/samtools/SamInputResource.java
- src/main/java/htsjdk/samtools/SamReader.java
- src/main/java/htsjdk/samtools/SamReaderFactory.java
- + src/main/java/htsjdk/samtools/cram/build/CramContainerHeaderIterator.java
- src/main/java/htsjdk/samtools/cram/build/CramContainerIterator.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/5c5e2f76d0fb254e387d16fffcbb898dce45badb

-- 
View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/5c5e2f76d0fb254e387d16fffcbb898dce45badb
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180917/8336fb4e/attachment.html>