[med-svn] [Git][med-team/htsjdk][master] Skip test requiring http connection

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / htsjdk


Commits:
bcb2717f by Andreas Tille at 2018-09-18T12:21:34Z
Skip test requiring http connection

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/92-disable-testhttp.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,15 @@
 htsjdk (2.16.1+dfsg-1) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * New upstream version
   * debhelper 11
   * Standards-Version: 4.2.1
+  * Skip test requiring http connection
+
+  [ Olivier Sallou ]
+  * Skip test requiring ftp connection
 
- -- Andreas Tille <tille at debian.org>  Mon, 17 Sep 2018 16:01:03 +0200
+ -- Andreas Tille <tille at debian.org>  Tue, 18 Sep 2018 11:00:54 +0200
 
 htsjdk (2.14.3+dfsg-3) unstable; urgency=medium
 


=====================================
debian/patches/92-disable-testhttp.patch
=====================================
@@ -0,0 +1,35 @@
+Author: Andreas Tille <tille at debian.org>
+Date:   Wed Sep 18 14:28:01 2018 +0200
+Description: Skip test requiring http connection
+
+--- a/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java
++++ b/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java
+@@ -149,28 +149,6 @@ public class BlockCompressedInputStreamT
+         return linesWritten;
+     }
+ 
+-    @DataProvider(name = "customInflaterInput")
+-    public Object[][] customInflateInput() throws IOException {
+-        final File tempFile = File.createTempFile("testCustomInflater.", ".bam");
+-        tempFile.deleteOnExit();
+-        final List<String> linesWritten = writeTempBlockCompressedFileForInflaterTest(tempFile);
+-
+-        final InflaterFactory countingInflaterFactory = new CountingInflaterFactory();
+-
+-        return new Object[][]{
+-                // set the default InflaterFactory to a CountingInflaterFactory
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new FileInputStream(tempFile), false), linesWritten, 4, countingInflaterFactory},
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(tempFile), linesWritten, 4, countingInflaterFactory},
+-                {(CheckedExceptionInputStreamSupplier) () -> new AsyncBlockCompressedInputStream(tempFile), linesWritten, 4, countingInflaterFactory},
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new URL("http://broadinstitute.github.io/picard/testdata/index_test.bam")), null, 21, countingInflaterFactory},
+-                // provide a CountingInflaterFactory explicitly
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new FileInputStream(tempFile), false, countingInflaterFactory), linesWritten, 4, null},
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(tempFile, countingInflaterFactory), linesWritten, 4, null},
+-                {(CheckedExceptionInputStreamSupplier) () -> new AsyncBlockCompressedInputStream(tempFile, countingInflaterFactory), linesWritten, 4, null},
+-                {(CheckedExceptionInputStreamSupplier) () -> new BlockCompressedInputStream(new URL("http://broadinstitute.github.io/picard/testdata/index_test.bam"), countingInflaterFactory), null, 21, null}
+-        };
+-    }
+-
+     @Test(dataProvider = "customInflaterInput", singleThreaded = true)
+     public void testCustomInflater(final CheckedExceptionInputStreamSupplier bcisSupplier,
+                                    final List<String> expectedOutput,


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@
 70-removesometests-testng.patch
 80-2to3.patch
 90-disable-testftp.patch
+92-disable-testhttp.patch



View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/bcb2717f48207e8b96f709803a36eb50f40c095f

-- 
View it on GitLab: https://salsa.debian.org/med-team/htsjdk/commit/bcb2717f48207e8b96f709803a36eb50f40c095f
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