[med-svn] [Git][med-team/gubbins][master] 11 commits: New upstream version 2.3.4

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gubbins


Commits:
79354185 by Andreas Tille at 2018-09-26T12:28:51Z
New upstream version 2.3.4
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d67e2d80 by Andreas Tille at 2018-09-26T12:28:54Z
Update upstream source from tag 'upstream/2.3.4'

Update to upstream version '2.3.4'
with Debian dir d091ea0e0dd7cc8050bcb8fb79fb392e37634672
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383b88ae by Andreas Tille at 2018-09-26T12:28:54Z
New upstream version

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418043d4 by Andreas Tille at 2018-09-26T12:28:54Z
debhelper 11

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b3782f58 by Andreas Tille at 2018-09-26T12:28:59Z
Point Vcs fields to salsa.debian.org

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fc3dc63a by Andreas Tille at 2018-09-26T12:28:59Z
Standards-Version: 4.2.1

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8fe65992 by Andreas Tille at 2018-09-26T12:48:32Z
Refresh patches

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9d00f2dd by Andreas Tille at 2018-09-26T12:53:23Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test

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52de5289 by Andreas Tille at 2018-09-26T14:47:55Z
Do not parse d/changelog

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419e0f15 by Andreas Tille at 2018-09-26T14:48:35Z
Remove unneeded Testsuite: autopkgtest

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1f47e102 by Andreas Tille at 2018-09-26T14:50:55Z
Upload to unstable

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30 changed files:

- + .gitattributes
- .travis.yml
- CHANGELOG
- Dockerfile
- GubbinsManual_latest.docx
- INSTALL.md
- README.md
- VERSION
- debian/changelog
- debian/compat
- debian/control
- − debian/patches/add_missing_lib_for_check.patch
- debian/patches/disable_test.patch
- debian/patches/series
- debian/rules
- + example_data/PMEN1/PMEN1.branch_base_reconstruction.embl
- + example_data/PMEN1/PMEN1.filtered_polymorphic_sites.fasta
- + example_data/PMEN1/PMEN1.filtered_polymorphic_sites.phylip
- + example_data/PMEN1/PMEN1.final_tree.tre
- + example_data/PMEN1/PMEN1.node_labelled.tre
- + example_data/PMEN1/PMEN1.per_branch_statistics.csv
- + example_data/PMEN1/PMEN1.recombination_predictions.embl
- + example_data/PMEN1/PMEN1.recombination_predictions.gff
- + example_data/PMEN1/PMEN1.summary_of_snp_distribution.vcf
- + example_data/PMEN1/README.md
- + example_data/ST239/README.md
- + example_data/ST239/ST239.branch_base_reconstruction.embl
- + example_data/ST239/ST239.filtered_polymorphic_sites.fasta
- + example_data/ST239/ST239.filtered_polymorphic_sites.phylip
- + example_data/ST239/ST239.final_tree.tre


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gubbins/compare/31868331abc4c873b7bc3fcc51a51c4dfbff2172...1f47e102ee50aaed2b299c03db38245f148771e6

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View it on GitLab: https://salsa.debian.org/med-team/gubbins/compare/31868331abc4c873b7bc3fcc51a51c4dfbff2172...1f47e102ee50aaed2b299c03db38245f148771e6
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