[med-svn] [Git][med-team/gubbins][upstream] New upstream version 2.3.4

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / gubbins


Commits:
79354185 by Andreas Tille at 2018-09-26T12:28:51Z
New upstream version 2.3.4
- - - - -


30 changed files:

- + .gitattributes
- .travis.yml
- CHANGELOG
- Dockerfile
- GubbinsManual_latest.docx
- INSTALL.md
- README.md
- VERSION
- + example_data/PMEN1/PMEN1.branch_base_reconstruction.embl
- + example_data/PMEN1/PMEN1.filtered_polymorphic_sites.fasta
- + example_data/PMEN1/PMEN1.filtered_polymorphic_sites.phylip
- + example_data/PMEN1/PMEN1.final_tree.tre
- + example_data/PMEN1/PMEN1.node_labelled.tre
- + example_data/PMEN1/PMEN1.per_branch_statistics.csv
- + example_data/PMEN1/PMEN1.recombination_predictions.embl
- + example_data/PMEN1/PMEN1.recombination_predictions.gff
- + example_data/PMEN1/PMEN1.summary_of_snp_distribution.vcf
- + example_data/PMEN1/README.md
- + example_data/ST239/README.md
- + example_data/ST239/ST239.branch_base_reconstruction.embl
- + example_data/ST239/ST239.filtered_polymorphic_sites.fasta
- + example_data/ST239/ST239.filtered_polymorphic_sites.phylip
- + example_data/ST239/ST239.final_tree.tre
- + example_data/ST239/ST239.node_labelled.tre
- + example_data/ST239/ST239.per_branch_statistics.csv
- + example_data/ST239/ST239.recombination_predictions.embl
- + example_data/ST239/ST239.recombination_predictions.gff
- + example_data/ST239/ST239.summary_of_snp_distribution.vcf
- install_dependencies.sh
- python/scripts/gubbins_drawer.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gubbins/commit/793541856d1d61d0081967f5de1d2a750f8c2c56

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