[med-svn] [Git][med-team/python-bx][master] 10 commits: Breaks: python3-bx-tools
Andreas Tille
gitlab at salsa.debian.org
Thu Aug 1 09:00:07 BST 2019
Andreas Tille pushed to branch master at Debian Med / python-bx
Commits:
62e5027f by Andreas Tille at 2019-08-01T07:40:03Z
Breaks: python3-bx-tools
- - - - -
2d720d2e by Andreas Tille at 2019-08-01T07:40:20Z
debhelper-compat 12
- - - - -
0dd8331a by Andreas Tille at 2019-08-01T07:43:27Z
Point Vcs fields to salsa.debian.org
- - - - -
3de8d319 by Andreas Tille at 2019-08-01T07:43:27Z
Standards-Version: 4.4.0
- - - - -
a6986346 by Andreas Tille at 2019-08-01T07:43:27Z
Testsuite: autopkgtest-pkg-python
- - - - -
11f6429f by Andreas Tille at 2019-08-01T07:43:28Z
Secure URI in copyright format
- - - - -
97bf7880 by Andreas Tille at 2019-08-01T07:43:28Z
Remove trailing whitespace in debian/copyright
- - - - -
08accd14 by Andreas Tille at 2019-08-01T07:53:57Z
Fix license name
- - - - -
447090da by Andreas Tille at 2019-08-01T07:55:15Z
hardening=+all
- - - - -
060899b9 by Andreas Tille at 2019-08-01T07:59:10Z
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+python-bx (0.8.4-2) unstable; urgency=medium
+
+ * Team upload.
+ * Breaks: python3-bx-tools
+ Closes: #933596
+ * debhelper-compat 12
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.4.0
+ * Testsuite: autopkgtest-pkg-python
+ * Secure URI in copyright format
+ * Remove trailing whitespace in debian/copyright
+ * Fix license name
+ * hardening=+all
+
+ -- Andreas Tille <tille at debian.org> Thu, 01 Aug 2019 09:55:20 +0200
+
python-bx (0.8.4-1) unstable; urgency=medium
* New upstream release. Removed Python2 binary packages; enabled the tests
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-9
=====================================
debian/control
=====================================
@@ -1,33 +1,34 @@
Source: python-bx
-Section: python
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller at debian.org>,
Michael Crusoe <michael.crusoe at gmail.com>
-Build-Depends:
- debhelper (>= 9),
- dh-python,
- zlib1g-dev,
- python3-setuptools,
- python3-all-dev,
- python3-lzo,
- python3-nose,
- python3-numpy,
- python3-six,
- cython3
-Standards-Version: 4.2.1
-Homepage: https://github.com/bxlab/bx-python
-Vcs-Git: https://salsa.debian.org/med-team/python-bx.git
+Section: python
+Testsuite: autopkgtest-pkg-python
+Priority: optional
+Build-Depends: debhelper-compat (= 12),
+ dh-python,
+ zlib1g-dev,
+ python3-setuptools,
+ python3-all-dev,
+ python3-lzo,
+ python3-nose,
+ python3-numpy,
+ python3-six,
+ cython3
+Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/python-bx
+Vcs-Git: https://salsa.debian.org/med-team/python-bx.git
+Homepage: https://github.com/bxlab/bx-python
Package: python3-bx
Architecture: any
Depends: python3-lzo,
- ${shlibs:Depends},
+ ${shlibs:Depends},
${misc:Depends},
- ${python3:Depends},
-Replaces: python3-bx-tools
+ ${python3:Depends}
+Breaks: python3-bx-tools
Provides: python3-bx-tools
+Replaces: python3-bx-tools
Description: library to manage genomic data and its alignment
The bx-python project is a python library and associated set of scripts to
allow for rapid implementation of genome scale analyses. The library contains
=====================================
debian/copyright
=====================================
@@ -1,9 +1,9 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: bx-python
Source: https://github.com/bxlab/bx-python
-# Update the list of files to exclude by
+# Update the list of files to exclude by
# grep -rl "Generated by Cython"
-Files-Excluded: lib/bx/bbi/bbi_file.h lib/bx/_seqmapping.c lib/bx/bitset.c lib/bx/pwm/_position_weight_matrix.c lib/bx/motif/_pwm.c lib/bx/bbi/cirtree_file.c lib/bx/bbi/bbi_file.c lib/bx/bbi/bpt_file.c lib/bx/bbi/bigwig_file.c lib/bx/bbi/bigbed_file.c lib/bx/intseq/ngramcount.c lib/bx/seq/_twobit.c lib/bx/seq/_nib.c lib/bx/intervals/cluster.c lib/bx/intervals/intersection.c lib/bx/misc/_seekbzip2.c lib/bx/misc/bgzf.c lib/bx/arrays/wiggle.c lib/bx/arrays/bed.c lib/bx/arrays/array_tree.c lib/bx/align/_epo.c lib/bx/align/_core.c lib/bx/align/sitemask/_cpg.c
+Files-Excluded: lib/bx/bbi/bbi_file.h lib/bx/_seqmapping.c lib/bx/bitset.c lib/bx/pwm/_position_weight_matrix.c lib/bx/motif/_pwm.c lib/bx/bbi/cirtree_file.c lib/bx/bbi/bbi_file.c lib/bx/bbi/bpt_file.c lib/bx/bbi/bigwig_file.c lib/bx/bbi/bigbed_file.c lib/bx/intseq/ngramcount.c lib/bx/seq/_twobit.c lib/bx/seq/_nib.c lib/bx/intervals/cluster.c lib/bx/intervals/intersection.c lib/bx/misc/_seekbzip2.c lib/bx/misc/bgzf.c lib/bx/arrays/wiggle.c lib/bx/arrays/bed.c lib/bx/arrays/array_tree.c lib/bx/align/_epo.c lib/bx/align/_core.c lib/bx/align/sitemask/_cpg.c
Files: *
Copyright: 2005-2015 The Pennsylvania State University
@@ -46,11 +46,11 @@ License: MIT
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
- CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
- TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-License: GPL-2.0
+License: GPL-2
This package is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation version 2 of the License.
=====================================
debian/rules
=====================================
@@ -9,6 +9,8 @@ export NOSE_VERBOSE=2
export PYBUILD_NAME=bx-python
export PYBUILD_BEFORE_TEST=cp -r {dir}/test_data {build_dir}/
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
%:
dh $@ --with python3 --buildsystem=pybuild
View it on GitLab: https://salsa.debian.org/med-team/python-bx/compare/8ba7414e6c63650488dd76a932e6e4b3f10bc006...060899b9699258d4e5fa0e4bddb3c007378f4202
--
View it on GitLab: https://salsa.debian.org/med-team/python-bx/compare/8ba7414e6c63650488dd76a932e6e4b3f10bc006...060899b9699258d4e5fa0e4bddb3c007378f4202
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