[med-svn] [Git][med-team/aevol][master] 4 commits: Build-Depends: autoconf-archive

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / aevol


Commits:
fd85152f by Andreas Tille at 2019-08-01T11:19:01Z
Build-Depends: autoconf-archive

- - - - -
81487c8b by Andreas Tille at 2019-08-01T11:19:37Z
Remove debug code from autopkgtest

- - - - -
54c5b1a7 by Andreas Tille at 2019-08-01T11:20:10Z
Remove unneeded patch

- - - - -
9c0f433e by Andreas Tille at 2019-08-01T11:31:03Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- − debian/patches/fix_autoconf.patch
- − debian/patches/series
- debian/tests/run-unit-tests


Changes:

=====================================
debian/changelog
=====================================
@@ -1,12 +1,14 @@
-aevol (5.0+ds-1) UNRELEASED; urgency=medium
+aevol (5.0+ds-1) unstable; urgency=medium
 
   * Team upload.
   * Strip m4 files and once at stripping unnneded autogenerated files
     from automake
     Closes: #933628
   * Build-Depends: libopenmpi-dev
+  * Build-Depends: autoconf-archive
+  * Remove debug code from autopkgtest
 
- -- Andreas Tille <tille at debian.org>  Thu, 01 Aug 2019 09:12:07 +0200
+ -- Andreas Tille <tille at debian.org>  Thu, 01 Aug 2019 13:20:27 +0200
 
 aevol (5.0-3) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -9,7 +9,8 @@ Build-Depends: debhelper-compat (= 12),
                libboost-dev,
                libboost-system-dev,
                libboost-filesystem-dev,
-               libopenmpi-dev
+               libopenmpi-dev,
+               autoconf-archive
 Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/aevol
 Vcs-Git: https://salsa.debian.org/med-team/aevol.git


=====================================
debian/patches/fix_autoconf.patch deleted
=====================================
@@ -1,22 +0,0 @@
-Description: Fow whatever reason this needs to be needed after removing ax_boost macros
-Bug-Debian: https://bugs.debian.org/933628
-Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 01 Aug 2019 09:17:45 +0200
-
---- a/configure.ac
-+++ b/configure.ac
-@@ -44,11 +44,13 @@ AC_PROG_RANLIB
- AC_OPENMP
- AM_PROG_CC_C_O
- 
-+m4_pattern_allow([AC_MSG_ERROR])
-+
- # Print warning if openmp not found
- AC_CHECK_HEADER([omp.h], , [AC_MSG_WARN([openmp not found - continuing without openmp support])])
- 
- # Check for boost
--AX_BOOST_BASE([1.55],, [AC_MSG_ERROR([boost not found, please check that you have boost installed on your system and retry])])
-+AX_BOOST_BASE
- AX_BOOST_SYSTEM
- AX_BOOST_FILESYSTEM
- 


=====================================
debian/patches/series deleted
=====================================
@@ -1 +0,0 @@
-fix_autoconf.patch


=====================================
debian/tests/run-unit-tests
=====================================
@@ -8,7 +8,7 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   # Double quote below to expand the temporary directory variable now versus
   # later is on purpose.
   # shellcheck disable=SC2064
-#  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
 cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
@@ -16,9 +16,6 @@ cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
 cd "${AUTOPKGTEST_TMP}"
 gunzip -r *
 
-# Just for debugging
-set -x
-
 # Run simulation
 cd workflow/wild_type
 aevol_create
@@ -134,4 +131,3 @@ do
    aevol_misc_ancestor_stats lineage-*.ae -M &
    cd ..
 done
-



View it on GitLab: https://salsa.debian.org/med-team/aevol/compare/76ab556d09b5bb82f93dbb77164fcb573c4248ee...9c0f433e394309d9f1be28e6c4b1083c44042bab

-- 
View it on GitLab: https://salsa.debian.org/med-team/aevol/compare/76ab556d09b5bb82f93dbb77164fcb573c4248ee...9c0f433e394309d9f1be28e6c4b1083c44042bab
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