[med-svn] [Git][med-team/pbbam][master] 13 commits: New upstream version 0.23.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbbam


Commits:
f735b66e by Andreas Tille at 2019-08-04T07:15:29Z
New upstream version 0.23.0+dfsg
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0d47528f by Andreas Tille at 2019-08-04T07:15:35Z
Update upstream source from tag 'upstream/0.23.0+dfsg'

Update to upstream version '0.23.0+dfsg'
with Debian dir f9ef1924050a7ddb4f9da074e18abdd1941ef900
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4eee247d by Andreas Tille at 2019-08-04T07:15:35Z
New upstream version

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cbcd84fa by Andreas Tille at 2019-08-04T07:15:36Z
debhelper-compat 12

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d3713885 by Andreas Tille at 2019-08-04T07:15:39Z
Standards-Version: 4.4.0

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3b544abb by Andreas Tille at 2019-08-04T07:16:00Z
Set upstream metadata fields: Contact, Name.

Fixes lintian: upstream-metadata-file-is-missing
See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.

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522109f8 by Andreas Tille at 2019-08-04T09:17:41Z
Add myself to Uploaders

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01d9e861 by Andreas Tille at 2019-08-04T09:19:13Z
Rename library to libpbbam0.23.0 due to upstream choice of ABI version

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ab364613 by Andreas Tille at 2019-08-04T13:36:45Z
Remove code copy of python-cram from upstream source

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7de6f9cd by Andreas Tille at 2019-08-04T13:37:15Z
New upstream version 0.23.0+dfsg
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1ebab68a by Andreas Tille at 2019-08-04T13:37:20Z
Update upstream source from tag 'upstream/0.23.0+dfsg'

Update to upstream version '0.23.0+dfsg'
with Debian dir dacf37bd6dcf8536c018daa463af441674ce7669
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fa61bcd1 by Andreas Tille at 2019-08-04T13:40:42Z
Build-Depends: python3-cram,  d/control: Use <!nocheck> instead of comment

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38606146 by Andreas Tille at 2019-08-04T19:15:56Z
Get rid of Python2 dependency

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30 changed files:

- .gitignore
- CHANGELOG.md
- − CMakeLists.txt
- bamboo_build.sh
- − bamboo_build_itg.sh
- − bamboo_build_pa.sh
- − bamboo_coverage.sh
- − cmake/FindHTSlib.cmake
- − cmake/PbbamTool.cmake
- − cmake/pbbam-ccache.cmake
- − cmake/pbbam-compilerflags.cmake
- − cmake/pbbam-dependencies.cmake
- − cmake/pbbam-libtype.cmake
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/patches/python3.patch
- debian/patches/series
- + debian/patches/use_debian_packaged_python3-cram.patch
- debian/rules
- + debian/upstream/metadata
- − docs/CMakeLists.txt
- docs/source/conf.py
- docs/source/getting_started.rst
- − docs/source/swig_bindings.rst
- docs/specs/pbbam.rst
- include/meson.build
- include/pbbam/Accuracy.h
- include/pbbam/AlignmentPrinter.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/616ea2c9c4bfe3891976561067fa2f50041667f1...38606146cb9a65128f2204c1b9b896e9b3c77a32

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View it on GitLab: https://salsa.debian.org/med-team/pbbam/compare/616ea2c9c4bfe3891976561067fa2f50041667f1...38606146cb9a65128f2204c1b9b896e9b3c77a32
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