[med-svn] [Git][med-team/gatb-core][master] 9 commits: New upstream version 1.4.1+git20190813.a73b6dd+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gatb-core


Commits:
8febe06b by Andreas Tille at 2019-08-17T20:09:04Z
New upstream version 1.4.1+git20190813.a73b6dd+dfsg
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ffa40ad3 by Andreas Tille at 2019-08-17T20:09:11Z
Update upstream source from tag 'upstream/1.4.1+git20190813.a73b6dd+dfsg'

Update to upstream version '1.4.1+git20190813.a73b6dd+dfsg'
with Debian dir 0e160360475cccfbba2f70314c51a12a84c7bfd7
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27a36e2d by Andreas Tille at 2019-08-17T20:09:11Z
New upstream version

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d0e4c400 by Andreas Tille at 2019-08-17T20:09:11Z
debhelper-compat 12

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86fb643d by Andreas Tille at 2019-08-17T20:09:19Z
Standards-Version: 4.4.0

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3b723359 by Andreas Tille at 2019-08-17T20:19:31Z
Adapt patches

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7cfcd569 by Andreas Tille at 2019-08-20T10:45:01Z
Fix symbols file to match output from gcc9

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dd6165ee by Andreas Tille at 2019-08-20T10:51:43Z
List missing dependencies explicitly

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b1e77221 by Andreas Tille at 2019-08-20T11:05:26Z
Upload to unstable

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30 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/libgatbcore2.symbols.amd64
- debian/patches/fix_install_location.patch
- debian/patches/use_debian_packaged_hdf5.patch
- gatb-core/.gitignore
- gatb-core/CMakeLists.txt
- gatb-core/examples/Makefile
- gatb-core/src/gatb/bank/impl/BankFasta.cpp
- gatb-core/src/gatb/bcalm2/bglue_algo.cpp
- gatb-core/src/gatb/bcalm2/ograph.cpp
- gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
- gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
- gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
- gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp
- gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
- gatb-core/src/gatb/debruijn/impl/LinkTigs.hpp
- gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
- gatb-core/src/gatb/debruijn/impl/Simplifications.hpp
- gatb-core/src/gatb/debruijn/impl/Terminator.cpp
- gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/Model.hpp
- gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
- gatb-core/src/gatb/kmer/impl/PartiInfo.hpp
- gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
- gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
- gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gatb-core/compare/b57e6d2e539106f41298d56e42a94fac1bc1de48...b1e77221c1e8a890121fe5202ac0b16fdc994aa6

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View it on GitLab: https://salsa.debian.org/med-team/gatb-core/compare/b57e6d2e539106f41298d56e42a94fac1bc1de48...b1e77221c1e8a890121fe5202ac0b16fdc994aa6
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