[med-svn] [Git][med-team/libbpp-core][master] 6 commits: Rebuild for new version of gcc to fix symbols

Andreas Tille gitlab at salsa.debian.org
Tue Aug 20 14:59:51 BST 2019 


Andreas Tille pushed to branch master at Debian Med / libbpp-core


Commits:
aaa1329f by Andreas Tille at 2019-08-20T13:49:40Z
Rebuild for new version of gcc to fix symbols

- - - - -
984adb3d by Andreas Tille at 2019-08-20T13:52:36Z
debhelper-compat 12

- - - - -
0a166cab by Andreas Tille at 2019-08-20T13:52:39Z
Standards-Version: 4.4.0

- - - - -
3b228280 by Andreas Tille at 2019-08-20T13:52:43Z
Trim trailing whitespace.

Fixes lintian: file-contains-trailing-whitespace
See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details.

- - - - -
a61401aa by Andreas Tille at 2019-08-20T13:52:49Z
Set upstream metadata fields: Contact, Name.

Fixes lintian: upstream-metadata-file-is-missing
See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.

- - - - -
04fddf37 by Andreas Tille at 2019-08-20T13:58:35Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/libbpp-core4.symbols.amd64
- + debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+libbpp-core (2.4.1-4) unstable; urgency=medium
+
+  * Rebuild for new version of gcc to fix symbols
+    Closes: #925731
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Trim trailing whitespace.
+  * Set upstream metadata fields: Contact, Name.
+
+ -- Andreas Tille <tille at debian.org>  Tue, 20 Aug 2019 15:52:50 +0200
+
 libbpp-core (2.4.1-3) unstable; urgency=medium
 
   * More sensible way to provide symbols amd64 only
@@ -188,4 +199,3 @@ libbpp-core (2.0.0) unstable; urgency=low
   * New source tree.
 
  -- Julien Dutheil <julien.dutheil at univ-montp2.fr>  Mon, 07 Feb 2011 09:00:00 +0100
-


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,10 +4,10 @@ Uploaders: Julien Dutheil <julien.dutheil at univ-montp2.fr>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                cmake,
                d-shlibs
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-core
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-core.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page


=====================================
debian/libbpp-core4.symbols.amd64
=====================================
@@ -12,8 +12,11 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp10ColorTools8gradientEjRKNS_8RGBColorES3_ at Base 2.4.1
  _ZN3bpp10ColorTools8gradientEjRKNS_8RGBColorES3_S3_ at Base 2.4.1
  _ZN3bpp10EigenValueIdE4hqr2Ev at Base 2.4.1
+ _ZN3bpp10EigenValueIdE4tql2Ev at Base 2.4.1
  _ZN3bpp10EigenValueIdE5tred2Ev at Base 2.4.1
  _ZN3bpp10EigenValueIdE6orthesEv at Base 2.4.1
+ _ZN3bpp10EigenValueIdEC1ERKNS_6MatrixIdEE at Base 2.4.1
+ _ZN3bpp10EigenValueIdEC2ERKNS_6MatrixIdEE at Base 2.4.1
  _ZN3bpp10EigenValueIdED1Ev at Base 2.4.1
  _ZN3bpp10EigenValueIdED2Ev at Base 2.4.1
  _ZN3bpp10Uniform01K4ZEROE at Base 2.4.1
@@ -98,11 +101,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp11Uniform01QDD0Ev at Base 2.4.1
  _ZN3bpp11Uniform01QDD1Ev at Base 2.4.1
  _ZN3bpp11VectorTools4testEv at Base 2.4.1
- _ZN3bpp11VectorTools5pasteIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIT_SaIS9_EERKS7_ at Base 2.4.1
  _ZN3bpp11VectorTools6breaksERKSt6vectorIdSaIdEEj at Base 2.4.1
- _ZN3bpp11VectorTools6sumExpIdEET_RKSt6vectorIS2_SaIS2_EE at Base 2.4.1
- _ZN3bpp11VectorTools6sumExpIdEET_RKSt6vectorIS2_SaIS2_EES7_ at Base 2.4.1
- _ZN3bpp11VectorTools8whichMaxIdEEmRKSt6vectorIT_SaIS3_EE at Base 2.4.1
  _ZN3bpp12BracketPointD0Ev at Base 2.4.1
  _ZN3bpp12BracketPointD1Ev at Base 2.4.1
  _ZN3bpp12BracketPointD2Ev at Base 2.4.1
@@ -275,8 +274,10 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp16ApplicationTools12displayErrorERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp16ApplicationTools12displayGaugeEmmcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp16ApplicationTools12getAFilePathERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEEbbS8_bS8_i at Base 2.4.1
+ _ZN3bpp16ApplicationTools12getParameterIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi at Base 2.4.1
  _ZN3bpp16ApplicationTools12getParameterIlEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi at Base 2.4.1
  _ZN3bpp16ApplicationTools12warningLevelE at Base 2.4.1
+ _ZN3bpp16ApplicationTools13displayResultINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvRKS7_RKT_ at Base 2.4.1
  _ZN3bpp16ApplicationTools13terminalSplitE at Base 2.4.1
  _ZN3bpp16ApplicationTools13terminalWidthE at Base 2.4.1
  _ZN3bpp16ApplicationTools14displayMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
@@ -326,6 +327,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp16PgfGraphicDeviceD0Ev at Base 2.4.1
  _ZN3bpp16PgfGraphicDeviceD1Ev at Base 2.4.1
  _ZN3bpp16SvgGraphicDevice10drawCircleEddds at Base 2.4.1
+ _ZN3bpp16SvgGraphicDevice11colorToTextB5cxx11ERKNS_8RGBColorE at Base 2.4.1
  _ZN3bpp16SvgGraphicDevice3endEv at Base 2.4.1
  _ZN3bpp16SvgGraphicDevice5beginEv at Base 2.4.1
  _ZN3bpp16SvgGraphicDevice7commentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
@@ -519,6 +521,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp19BfgsMultiDimensions6doInitERKNS_13ParameterListE at Base 2.4.1
  _ZN3bpp19BfgsMultiDimensions6doStepEv at Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsC1EPNS_19DerivableFirstOrderE at Base 2.4.1
+ _ZN3bpp19BfgsMultiDimensionsC1ERKS0_ at Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsC2EPNS_19DerivableFirstOrderE at Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsD0Ev at Base 2.4.1
  _ZN3bpp19BfgsMultiDimensionsD1Ev at Base 2.4.1
@@ -547,6 +550,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp19LogsumHmmLikelihood22getHmmTransitionMatrixEv at Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihood27getHmmEmissionProbabilitiesEv at Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp19LogsumHmmLikelihoodC1ERKS0_ at Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodD0Ev at Base 2.4.1
  _ZN3bpp19LogsumHmmLikelihoodD1Ev at Base 2.4.1
@@ -670,6 +674,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp21RescaledHmmLikelihood22getHmmTransitionMatrixEv at Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihood27getHmmEmissionProbabilitiesEv at Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp21RescaledHmmLikelihoodC1ERKS0_ at Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodD0Ev at Base 2.4.1
  _ZN3bpp21RescaledHmmLikelihoodD1Ev at Base 2.4.1
@@ -1048,6 +1053,7 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp30LowMemoryRescaledHmmLikelihood22getHmmTransitionMatrixEv at Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihood27getHmmEmissionProbabilitiesEv at Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodC1EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm at Base 2.4.1
+ _ZN3bpp30LowMemoryRescaledHmmLikelihoodC1ERKS0_ at Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodC2EPNS_16HmmStateAlphabetEPNS_19HmmTransitionMatrixEPNS_24HmmEmissionProbabilitiesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm at Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodD0Ev at Base 2.4.1
  _ZN3bpp30LowMemoryRescaledHmmLikelihoodD1Ev at Base 2.4.1
@@ -1348,7 +1354,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZN3bpp9TextTools7toUpperERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp9TextTools8endsWithERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
  _ZN3bpp9TextTools8toDoubleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcc at Base 2.4.1
- _ZN3bpp9TextTools8toStringINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEES7_T_ at Base 2.4.1
  _ZN3bpp9TextTools8toStringIcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
  _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
  _ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
@@ -1999,8 +2004,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNKSt5ctypeIcE8do_widenEc at Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8FunctionEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_ at Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
- _ZNKSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE4findERS5_ at Base 2.4.1
- _ZNKSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE4findERS3_ at Base 2.4.1
  _ZNKSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE4findERS1_ at Base 2.4.1
  _ZNSt10shared_ptrIN3bpp12OutputStreamEED1Ev at Base 2.4.1
  _ZNSt10shared_ptrIN3bpp12OutputStreamEED2Ev at Base 2.4.1
@@ -2100,7 +2103,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt3mapIKN3bpp8RGBColorENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS2_ESaISt4pairIS2_S8_EEEixERS2_ at Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN3bpp8RGBColorESt4lessIS5_ESaISt4pairIKS5_S7_EEEixEOS5_ at Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_ at Base 2.4.1
- _ZNSt3mapISt10shared_ptrIN3bpp8OperatorEEjSt4lessIS3_ESaISt4pairIKS3_jEEEixERS7_ at Base 2.4.1
  _ZNSt3mapISt10shared_ptrIsEjSt4lessIS1_ESaISt4pairIKS1_jEEEixERS5_ at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_ at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseESt15_Deque_iteratorIS5_RS5_PS5_E at Base 2.4.1
@@ -2127,7 +2129,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJN9__gnu_cxx17__normal_iteratorIPKcS5_EESD_EEEvNSA_IPS5_S7_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE7reserveEm at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
@@ -2164,8 +2165,6 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt6vectorISt10shared_ptrIN3bpp8OperatorEESaIS3_EED2Ev at Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE12emplace_backIJS3_EEEvDpOT_ at Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_default_appendEm at Base 2.4.1
- _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS3_S5_EE at Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EED1Ev at Base 2.4.1
  _ZNSt6vectorISt10shared_ptrIN3bpp9ParameterEESaIS3_EED2Ev at Base 2.4.1
@@ -2231,11 +2230,9 @@ libbpp-core.so.4 libbpp-core4 #MINVER#
  _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EEaSERKS8_ at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE24_M_get_insert_unique_posERS5_ at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS5_ at Base 2.4.1
- _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE4findERS5_ at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIN3bpp8OperatorEESt4pairIKS3_jESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE24_M_get_insert_unique_posERS3_ at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS4_ERS3_ at Base 2.4.1
- _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE4findERS3_ at Base 2.4.1
  _ZNSt8_Rb_treeISt10shared_ptrIsESt4pairIKS1_jESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE8_M_eraseEPSt13_Rb_tree_nodeIS4_E at Base 2.4.1
  _ZNSt8_Rb_treeISt4pairIjjES1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE16_M_insert_uniqueIS1_EES0_ISt17_Rb_tree_iteratorIS1_EbEOT_ at Base 2.4.1
  _ZNSt8_Rb_treeISt4pairIjjES1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE4findERKS1_ at Base 2.4.1


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,2 @@
+Name: Bpp-Core
+Contact: Julien Yann Dutheil <julien.dutheil at univ-montp2.fr>



View it on GitLab: https://salsa.debian.org/med-team/libbpp-core/compare/57663471fc9bad6cdd050ae75429c60717488b44...04fddf37b3b50f028258ed779d73b8f0fa85655b

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbpp-core/compare/57663471fc9bad6cdd050ae75429c60717488b44...04fddf37b3b50f028258ed779d73b8f0fa85655b
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