[med-svn] [Git][med-team/libbpp-seq-omics][master] 5 commits: Rebuild for new version of gcc to fix symbols
Andreas Tille
gitlab at salsa.debian.org
Tue Aug 20 17:23:22 BST 2019
Andreas Tille pushed to branch master at Debian Med / libbpp-seq-omics
Commits:
5ca5979f by Andreas Tille at 2019-08-20T16:20:20Z
Rebuild for new version of gcc to fix symbols
- - - - -
6246fb60 by Andreas Tille at 2019-08-20T16:20:32Z
debhelper-compat 12
- - - - -
d1827859 by Andreas Tille at 2019-08-20T16:20:34Z
Standards-Version: 4.4.0
- - - - -
1b7e9486 by Andreas Tille at 2019-08-20T16:20:36Z
Trim trailing whitespace.
Fixes lintian: file-contains-trailing-whitespace
See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details.
- - - - -
07bd2a2e by Andreas Tille at 2019-08-20T16:22:29Z
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/libbpp-seq-omics3.symbols.amd64
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+libbpp-seq-omics (2.4.1-4) unstable; urgency=medium
+
+ * Rebuild for new version of gcc to fix symbols
+ Closes: #925737
+ * debhelper-compat 12
+ * Standards-Version: 4.4.0
+ * Trim trailing whitespace.
+
+ -- Andreas Tille <tille at debian.org> Tue, 20 Aug 2019 18:20:38 +0200
+
libbpp-seq-omics (2.4.1-3) unstable; urgency=medium
* Rebuild for new version of gcc to fix symbols
@@ -131,4 +141,3 @@ libbpp-seq-omics (2.0.3-1) unstable; urgency=low
* Initial release, forking from bpp-seq.
-- Julien Dutheil <julien.dutheil at univ-montp2.fr> Tue, 06 Nov 2012 14:05:00 +0100
-
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -4,11 +4,11 @@ Uploaders: Julien Dutheil <julien.dutheil at univ-montp2.fr>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
cmake,
d-shlibs (>= 0.82),
libbpp-seq-dev (>= 2.4.1)
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics
Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
=====================================
debian/libbpp-seq-omics3.symbols.amd64
=====================================
@@ -22,8 +22,8 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp11MafSequenceC1ERKS0_ at Base 2.4.1
_ZN3bpp11MafSequenceD0Ev at Base 2.4.1
_ZN3bpp11MafSequenceD1Ev at Base 2.4.1
- _ZN3bpp11VectorTools11vectorUnionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKS8_ISB_SaISB_EE at Base 2.4.1
_ZN3bpp11VectorTools18vectorIntersectionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKSB_SD_ at Base 2.4.1
+ _ZN3bpp11VectorTools6uniqueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKSB_ at Base 2.4.1
_ZN3bpp12EdSymbolList11getListenerEm at Base 2.4.1
_ZN3bpp12EdSymbolList20afterSequenceChangedERKNS_22SymbolListEditionEventE at Base 2.4.1
_ZN3bpp12EdSymbolList20afterSequenceDeletedERKNS_23SymbolListDeletionEventE at Base 2.4.1
@@ -37,11 +37,11 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp12EdSymbolList25beforeSequenceSubstitutedERKNS_27SymbolListSubstitutionEventE at Base 2.4.1
_ZN3bpp12EdSymbolList7shuffleEv at Base 2.4.1
_ZN3bpp12EdSymbolListixEm at Base 2.4.1
- _ZN3bpp12SequenceMaskC1ERKSt6vectorIbSaIbEEb at Base 2.4.1
_ZN3bpp12SequenceMaskD0Ev at Base 2.4.1
_ZN3bpp13AlphabetStateD0Ev at Base 2.4.1
_ZN3bpp13AlphabetStateD1Ev at Base 2.4.1
_ZN3bpp13BasicSequenceD0Ev at Base 2.4.1
+ _ZN3bpp13SequenceTools6subseqERKNS_8SequenceEmmRS1_ at Base 2.4.1
_ZN3bpp14LetterAlphabet13registerStateEPNS_13AlphabetStateE at Base 2.4.1
_ZN3bpp14LetterAlphabet8setStateEmPNS_13AlphabetStateE at Base 2.4.1
_ZN3bpp14SequenceWalkerC1ERKNS_8SequenceE at Base 2.4.1
@@ -181,7 +181,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp22WindowSplitMafIteratorD0Ev at Base 2.4.1
_ZN3bpp22WindowSplitMafIteratorD1Ev at Base 2.4.1
_ZN3bpp23VectorSequenceContainerD2Ev at Base 2.4.1
- _ZN3bpp24AlignedSequenceContainerC1ERKS0_ at Base 2.4.1
_ZN3bpp24EntropyFilterMafIterator16nextRemovedBlockEv at Base 2.4.1
_ZN3bpp24EntropyFilterMafIterator20analyseCurrentBlock_Ev at Base 2.4.1
_ZN3bpp24EntropyFilterMafIteratorD0Ev at Base 2.4.1
@@ -323,6 +322,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp9MafParserD0Ev at Base 2.4.1
_ZN3bpp9MafParserD1Ev at Base 2.4.1
_ZN3bpp9TextTools2toIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp9TextTools8toStringIcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
_ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
_ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
_ZN3bpp9TextTools8toStringIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.4.1
@@ -340,6 +340,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNK3bpp11MafSequence4stopEv at Base 2.4.1
_ZNK3bpp11MafSequence5cloneEv at Base 2.4.1
_ZNK3bpp11MafSequence5startEv at Base 2.4.1
+ _ZNK3bpp11MafSequence8getRangeEb at Base 2.4.1
_ZNK3bpp12EdSymbolList10getContentEv at Base 2.4.1
_ZNK3bpp12EdSymbolList11getAlphabetEv at Base 2.4.1
_ZNK3bpp12EdSymbolList11getListenerEm at Base 2.4.1
@@ -462,7 +463,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNK3bpp6NumberIiE8toStringB5cxx11Ev at Base 2.4.1
_ZNK3bpp6NumberIjE5cloneEv at Base 2.4.1
_ZNK3bpp6NumberIjE8toStringB5cxx11Ev at Base 2.4.1
- _ZNK3bpp8MafBlock11getSequenceEm at Base 2.4.1
_ZNK3bpp8MafBlock14getDescriptionB5cxx11Ev at Base 2.4.1
_ZNK3bpp8MafBlock21getSequenceForSpeciesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
_ZNK3bpp8MafBlock5cloneEv at Base 2.4.1
@@ -476,7 +476,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNK3bpp8SeqRange5cloneEv at Base 2.4.1
_ZNK3bpp8SeqRange9getStrandEv at Base 2.4.1
_ZNK3bpp9BppDouble5cloneEv at Base 2.4.1
- _ZNKSt15_Deque_iteratorISt6vectorIbSaIbEERS2_PS2_EplEl at Base 2.4.1
_ZNKSt5ctypeIcE8do_widenEc at Base 2.4.1
_ZNSt11_Deque_baseIPN3bpp8MafBlockESaIS2_EED1Ev at Base 2.4.1
_ZNSt11_Deque_baseIPN3bpp8MafBlockESaIS2_EED2Ev at Base 2.4.1
@@ -486,9 +485,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 2.4.1
_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv at Base 2.4.1
_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv at Base 2.4.1
- _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_ at Base 2.4.1
_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp10BppNumberIESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_ at Base 2.4.1
- _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_ at Base 2.4.1
_ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
_ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
_ZNSt5dequeIPN3bpp8MafBlockESaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_ at Base 2.4.1
@@ -497,6 +494,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt5dequeISt6vectorIiSaIiEESaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_ at Base 2.4.1
_ZNSt5dequeISt6vectorIiSaIiEESaIS2_EE19_M_destroy_data_auxESt15_Deque_iteratorIS2_RS2_PS2_ES8_ at Base 2.4.1
_ZNSt5dequeIjSaIjEE16_M_push_back_auxIJjEEEvDpOT_ at Base 2.4.1
+ _ZNSt5dequeImSaImEE17_M_push_front_auxIJmEEEvDpOT_ at Base 2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_ at Base 2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
@@ -507,7 +505,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt6vectorIPKN3bpp11MafSequenceESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp13SiteContainerESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
@@ -523,21 +520,14 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev at Base 2.4.1
_ZNSt6vectorIS_ImSaImEESaIS1_EED1Ev at Base 2.4.1
_ZNSt6vectorIS_ImSaImEESaIS1_EED2Ev at Base 2.4.1
- _ZNSt6vectorIbSaIbEEC1ERKS1_ at Base 2.4.1
- _ZNSt6vectorIbSaIbEEC2ERKS1_ at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorIiSaIiEEC1ERKS1_ at Base 2.4.1
- _ZNSt6vectorIiSaIiEEC2ERKS1_ at Base 2.4.1
_ZNSt6vectorIiSaIiEEaSERKS1_ at Base 2.4.1
_ZNSt6vectorIjSaIjEE14_M_fill_assignEmRKj at Base 2.4.1
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE12emplace_backIJmEEEvDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorImSaImEE9push_backERKm at Base 2.4.1
- _ZNSt6vectorImSaImEEC1ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_ at Base 2.4.1
- _ZNSt6vectorImSaImEEC2ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_ at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIN9__gnu_cxx17__normal_iteratorIPcS4_EEEEvT_SA_St20forward_iterator_tag at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag at Base 2.4.1
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/compare/6715febbe099a39005291c4e22d87d65b63bd45d...07bd2a2e157fbe24db24b557d33830730c736c5f
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/compare/6715febbe099a39005291c4e22d87d65b63bd45d...07bd2a2e157fbe24db24b557d33830730c736c5f
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