[med-svn] [Git][med-team/libbpp-popgen][master] 8 commits: Rebuild for new version of gcc to fix symbols

Andreas Tille gitlab at salsa.debian.org
Wed Aug 21 07:52:57 BST 2019 


Andreas Tille pushed to branch master at Debian Med / libbpp-popgen


Commits:
aa8ed8a8 by Andreas Tille at 2019-08-21T06:12:00Z
Rebuild for new version of gcc to fix symbols

- - - - -
f4ffeda7 by Andreas Tille at 2019-08-21T06:19:57Z
Prepare changelog for routine-update

- - - - -
94e6b8aa by Andreas Tille at 2019-08-21T06:20:32Z
debhelper-compat 12

- - - - -
e281733d by Andreas Tille at 2019-08-21T06:20:35Z
Standards-Version: 4.4.0

- - - - -
4284a1c2 by Andreas Tille at 2019-08-21T06:20:35Z
Remove trailing whitespace in debian/changelog

- - - - -
f3f5cffb by Andreas Tille at 2019-08-21T06:20:35Z
Remove trailing whitespace in debian/copyright

- - - - -
56c30a52 by Andreas Tille at 2019-08-21T06:20:43Z
Set upstream metadata fields: Contact, Name.

Fixes lintian: upstream-metadata-file-is-missing
See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.

- - - - -
654fb599 by Andreas Tille at 2019-08-21T06:23:49Z
Upload to unstable

- - - - -


6 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/libbpp-popgen8.symbols.amd64
- + debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,15 +1,23 @@
-libbpp-popgen (2.4.1-2) UNRELEASED; urgency=medium
+libbpp-popgen (2.4.1-2) unstable; urgency=medium
 
   [ Jelmer Vernooij]
   * Use secure copyright file specification URI.
   * Trim trailing whitespace.
 
   [ Julien Dutheil ]
-  * Standards-Version: 4.3.0
   * d-shlibs (>= 0.82)
-  * Easier amd64 symbol file management 
+  * Easier amd64 symbol file management
 
- -- Julien Dutheil <julien.dutheil at univ-montp2.fr>  Mon, 11 Mar 2019 08:54:44 +0200
+  [ Andreas Tille ]
+  * Rebuild for new version of gcc to fix symbols
+    Closes: #925733
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/copyright
+  * Set upstream metadata fields: Contact, Name.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Aug 2019 08:20:43 +0200
 
 libbpp-popgen (2.4.1-1) unstable; urgency=medium
 


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,12 +4,12 @@ Uploaders: Julien Dutheil <julien.dutheil at univ-montp2.fr>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                cmake,
                d-shlibs (>= 0.82),
                libbpp-core-dev (>= 2.4.1),
                libbpp-seq-dev (>= 2.4.1)
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-popgen
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-popgen.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
@@ -19,7 +19,7 @@ Architecture: any
 Section: libdevel
 Depends: libbpp-popgen8 (= ${binary:Version}),
          ${misc:Depends},
-	 ${devlibs:Depends},
+         ${devlibs:Depends},
          libbpp-core-dev (>= 2.4.1),
          libbpp-seq-dev (>= 2.4.1)
 Description: Bio++ Population Genetics library development files


=====================================
debian/copyright
=====================================
@@ -19,7 +19,7 @@ License: GPL-2+
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
     (at your option) any later version.
- . 
+ .
     This package is distributed in the hope that it will be useful,
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
@@ -159,7 +159,7 @@ License: CeCILL
  .
  The purpose of the Agreement is the grant by the Licensor to the
  Licensee of a non-exclusive, transferable and worldwide license for the
- Software as set forth in Article 5 hereinafter for the whole term of the 
+ Software as set forth in Article 5 hereinafter for the whole term of the
  protection granted by the rights over said Software.
  .
  .
@@ -179,7 +179,7 @@ License: CeCILL
  characteristics of the Software, to the limited warranty, and to the
  fact that its use is restricted to experienced users has been provided
  to the Licensee prior to its acceptance as set forth in Article 3.1
- hereinabove, and the Licensee hereby acknowledges that it has read and 
+ hereinabove, and the Licensee hereby acknowledges that it has read and
  understood it.
  .
  .
@@ -427,7 +427,7 @@ License: CeCILL
  9.3 The Licensee acknowledges that the Software is supplied "as is" by
  the Licensor without any other express or tacit warranty, other than
  that provided for in Article 9.2 and, in particular, without any warranty
- as to its commercial value, its secured, safe, innovative or relevant 
+ as to its commercial value, its secured, safe, innovative or relevant
  nature.
  .
  Specifically, the Licensor does not warrant that the Software is free


=====================================
debian/libbpp-popgen8.symbols.amd64
=====================================
@@ -61,6 +61,7 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZN3bpp11PopgenlibIOD1Ev at Base 2.4.1
  _ZN3bpp11PopgenlibIOD2Ev at Base 2.4.1
  _ZN3bpp11VectorTools3covIddEET0_RKSt6vectorIT_SaIS4_EES8_b at Base 2.4.1
+ _ZN3bpp11VectorTools6uniqueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIT_SaIS9_EERKSB_ at Base 2.4.1
  _ZN3bpp12AnalyzedLoci12setLocusInfoEmRKNS_9LocusInfoE at Base 2.4.1
  _ZN3bpp12AnalyzedLoci24addAlleleInfoByLocusNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_10AlleleInfoE at Base 2.4.1
  _ZN3bpp12AnalyzedLoci28addAlleleInfoByLocusPositionEmRKNS_10AlleleInfoE at Base 2.4.1
@@ -73,7 +74,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZN3bpp12DataSetTools12buildDataSetERKNS_24OrderedSequenceContainerE at Base 2.4.1
  _ZN3bpp12DataSetTools12buildDataSetERKNS_29PolymorphismSequenceContainerE at Base 2.4.1
  _ZN3bpp13BasicSequenceD0Ev at Base 2.4.1
- _ZN3bpp13BasicSequenceD1Ev at Base 2.4.1
  _ZN3bpp14DistanceMatrix8asMatrixEv at Base 2.4.1
  _ZN3bpp14DistanceMatrixD0Ev at Base 2.4.1
  _ZN3bpp14DistanceMatrixD1Ev at Base 2.4.1
@@ -99,7 +99,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZN3bpp15StringTokenizerD0Ev at Base 2.4.1
  _ZN3bpp15StringTokenizerD1Ev at Base 2.4.1
  _ZN3bpp15StringTokenizerD2Ev at Base 2.4.1
- _ZN3bpp15SymbolListTools9getCountsERKNS_10SymbolListERSt3mapIimSt4lessIiESaISt4pairIKimEEE at Base 2.4.1
  _ZN3bpp15VectorExceptionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEED0Ev at Base 2.4.1
  _ZN3bpp15VectorExceptionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEED1Ev at Base 2.4.1
  _ZN3bpp15VectorExceptionINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEED2Ev at Base 2.4.1
@@ -268,6 +267,8 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZN3bpp19VectorSiteContainerclEmm at Base 2.4.1
  _ZN3bpp20AbstractOutputStream12setPrecisionEi at Base 2.4.1
  _ZN3bpp20AbstractOutputStream24enableScientificNotationEb at Base 2.4.1
+ _ZN3bpp20EmptyVectorExceptionImEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorImSaImEE at Base 2.4.1
+ _ZN3bpp20EmptyVectorExceptionImEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorImSaImEE at Base 2.4.1
  _ZN3bpp20EmptyVectorExceptionImED0Ev at Base 2.4.1
  _ZN3bpp20EmptyVectorExceptionImED1Ev at Base 2.4.1
  _ZN3bpp20EmptyVectorExceptionImED2Ev at Base 2.4.1
@@ -528,7 +529,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZN3bpp4Site11setPositionEi at Base 2.4.1
  _ZN3bpp4SiteD0Ev at Base 2.4.1
  _ZN3bpp4SiteD1Ev at Base 2.4.1
- _ZN3bpp5FastaC1Ejbbb at Base 2.4.1
  _ZN3bpp5FastaD1Ev at Base 2.4.1
  _ZN3bpp5Group10setGroupIdEm at Base 2.4.1
  _ZN3bpp5Group12setGroupNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
@@ -904,21 +904,18 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZNK3bpp9RowMatrixIdEclEmm at Base 2.4.1
  _ZNKSt5ctypeIcE8do_widenEc at Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp23VectorSequenceContainerEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_ at Base 2.4.1
- _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
  _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessIS5_ESaISt4pairIKS5_dEEEixEOS5_ at Base 2.4.1
- _ZNSt3mapIidSt4lessIiESaISt4pairIKidEEEixEOi at Base 2.4.1
- _ZNSt3mapIidSt4lessIiESaISt4pairIKidEEEixERS3_ at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
  _ZNSt6vectorIN3bpp19GeneMapperCsvExport6AlleleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED2Ev at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_ at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_ at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
  _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_ at Base 2.4.1
@@ -957,7 +954,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
  _ZNSt6vectorImSaImEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPmS1_EE at Base 2.4.1
- _ZNSt6vectorImSaImEE9push_backERKm at Base 2.4.1
  _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIN9__gnu_cxx17__normal_iteratorIPcS4_EEEEvT_SA_St20forward_iterator_tag at Base 2.4.1
  _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag at Base 2.4.1
  _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag at Base 2.4.1
@@ -988,6 +984,7 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
+ _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
@@ -1025,7 +1022,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_ at Base 2.4.1
  _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_ at Base 2.4.1
  _ZSt5fixedRSt8ios_base at Base 2.4.1
- _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEENS0_5__ops16_Iter_equals_valIKmEEET_SB_SB_T0_St26random_access_iterator_tag at Base 2.4.1
  _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_ at Base 2.4.1
  _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_ at Base 2.4.1
  _ZTIN3bpp10AlleleInfoE at Base 2.4.1
@@ -1292,7 +1288,6 @@ libbpp-popgen.so.8 libbpp-popgen8 #MINVER#
  _ZTv0_n24_N3bpp11PopgenlibIOD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp11PopgenlibIOD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp13BasicSequenceD0Ev at Base 2.4.1
- _ZTv0_n24_N3bpp13BasicSequenceD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp14DistanceMatrixD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp14DistanceMatrixD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp15BasicAlleleInfoD0Ev at Base 2.4.1


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,2 @@
+Name: Bpp-PopGen
+Contact: Julien Yann Dutheil <julien.dutheil at univ-montp2.fr>



View it on GitLab: https://salsa.debian.org/med-team/libbpp-popgen/compare/d733b8fb54ee1757e0937e5d265b709043072e5f...654fb599150d6172c0dde6f8223786c7180853c9

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbpp-popgen/compare/d733b8fb54ee1757e0937e5d265b709043072e5f...654fb599150d6172c0dde6f8223786c7180853c9
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190821/74ee928c/attachment-0001.html>

More information about the debian-med-commit mailing list