[med-svn] [Git][med-team/parsinsert][master] 9 commits: Run command from autopkgtest also as runtime-test to spot issues for certain architectures earlier
Andreas Tille
gitlab at salsa.debian.org
Wed Dec 4 15:51:53 GMT 2019
Andreas Tille pushed to branch master at Debian Med / parsinsert
Commits:
7203c2af by Andreas Tille at 2019-12-04T15:27:53Z
Run command from autopkgtest also as runtime-test to spot issues for certain architectures earlier
- - - - -
dc2f0d10 by Andreas Tille at 2019-12-04T15:28:11Z
debhelper-compat 12
- - - - -
6b9029dd by Andreas Tille at 2019-12-04T15:28:14Z
Standards-Version: 4.4.1
- - - - -
31435f7e by Andreas Tille at 2019-12-04T15:28:14Z
Secure URI in copyright format
- - - - -
53566247 by Andreas Tille at 2019-12-04T15:28:33Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
- - - - -
fd486466 by Andreas Tille at 2019-12-04T15:28:33Z
Remove trailing whitespace in debian/changelog
- - - - -
8213c0f1 by Andreas Tille at 2019-12-04T15:28:38Z
Use secure URI in debian/watch.
Fixes lintian: debian-watch-uses-insecure-uri
See https://lintian.debian.org/tags/debian-watch-uses-insecure-uri.html for more details.
- - - - -
1fae9b23 by Andreas Tille at 2019-12-04T15:28:49Z
Set upstream metadata fields: Archive.
- - - - -
39bb9a5e by Andreas Tille at 2019-12-04T15:36:26Z
Upload to unstable
- - - - -
8 changed files:
- debian/README.source
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/rules
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/README.source
=====================================
@@ -1,12 +1,11 @@
parsinsert for Debian
=====================
-Usually we try to run thge upstream test suite. However, the upstream
-tarball is missing the file Test.cpp so we can not run this. Upstream
-is informed and we try to deliver the package including the test suite
-in the future.
+Usually we try to run the upstream test suite. However, the upstream
+tarball is missing the file Test.cpp so we can not run this. Instead
+the autopkgtest command is used as build time test.
- -- Andreas Tille <tille at debian.org> Thu, 27 Feb 2014 16:50:26 +0000
+ -- Andreas Tille <tille at debian.org> Wed, 04 Dec 2019 16:26:00 +0100
The files in debian/tests/test_data was retrieved sourceforge
URL: https://sourceforge.net/projects/parsinsert/files
=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+parsinsert (1.04-5) unstable; urgency=medium
+
+ * Run command from autopkgtest also as runtime-test to spot issues
+ for certain architectures earlier
+ * debhelper-compat 12
+ * Standards-Version: 4.4.1
+ * Secure URI in copyright format
+ * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+ * Remove trailing whitespace in debian/changelog
+ * Use secure URI in debian/watch.
+ * Set upstream metadata fields: Archive.
+
+ -- Andreas Tille <tille at debian.org> Wed, 04 Dec 2019 16:28:50 +0100
+
parsinsert (1.04-4) unstable; urgency=medium
* debhelper 11
@@ -9,7 +23,7 @@ parsinsert (1.04-4) unstable; urgency=medium
parsinsert (1.04-3) unstable; urgency=medium
* Team upload.
-
+
[ Nadiya Sitdykova ]
* add autopkgtest test
* add info about source of test_data
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -4,8 +4,8 @@ Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 12)
+Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/parsinsert
Vcs-Git: https://salsa.debian.org/med-team/parsinsert.git
Homepage: http://sourceforge.net/projects/parsinsert/
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ParsInsert
Upstream-Contact: David Knox <david.knox at colorado.edu>
Source: http://parsinsert.sourceforge.net
=====================================
debian/rules
=====================================
@@ -16,7 +16,12 @@ override_dh_auto_clean:
dh_auto_clean
override_dh_auto_test:
- echo "Upstream tarball lacks Test.cpp so we can not run the test."
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+ cd debian/tests/test_data && \
+ $(CURDIR)/parsinsert -d0 -c80 -n1 set1000.fasta -m lanemask.txt -x rdp.taxonomy \
+ -l set1000.log -o set1000.results -t core_rdp.ntree \
+ -s core_rdp.fasta
+endif
# Note a manpage was generated using:
# help2man -N ./parsinsert --version-string=1.04 > debian/parsinsert.1
=====================================
debian/upstream/metadata
=====================================
@@ -1,7 +1,8 @@
Registry:
- - Name: OMICtools
- Entry: OMICS_21460
- - Name: SciCrunch
- Entry: NA
- - Name: bio.tools
- Entry: NA
+- Name: OMICtools
+ Entry: OMICS_21460
+- Name: SciCrunch
+ Entry: NA
+- Name: bio.tools
+ Entry: NA
+Archive: SourceForge
=====================================
debian/watch
=====================================
@@ -1,2 +1,2 @@
version=3
-http://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz
+https://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz
View it on GitLab: https://salsa.debian.org/med-team/parsinsert/compare/bd39eade1c8ddbc0703416f20756424ef0d3c233...39bb9a5ecc762b2c25770603a532bd8835356ee1
--
View it on GitLab: https://salsa.debian.org/med-team/parsinsert/compare/bd39eade1c8ddbc0703416f20756424ef0d3c233...39bb9a5ecc762b2c25770603a532bd8835356ee1
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