[med-svn] [Git][med-team/plink2][master] 2 commits: Fix autopkgtest

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / plink2


Commits:
ec82585d by Dylan Aïssi at 2019-12-06T21:25:06Z
Fix autopkgtest

- - - - -
ff817ba6 by Dylan Aïssi at 2019-12-06T21:30:33Z
Upload to NEW

- - - - -


2 changed files:

- debian/changelog
- debian/tests/run-sample-analysis


Changes:

=====================================
debian/changelog
=====================================
@@ -1,7 +1,5 @@
-plink2 (2.00~a2-191128+dfsg-1) UNRELEASED; urgency=medium
+plink2 (2.00~a2-191128+dfsg-1) unstable; urgency=medium
 
   * Initial release. (Closes: #858947)
-  * TODO:
-    - add autopkgtest
 
- -- Dylan Aïssi <daissi at debian.org>  Wed, 20 Nov 2019 07:00:08 +0100
+ -- Dylan Aïssi <daissi at debian.org>  Fri, 06 Dec 2019 22:28:40 +0100


=====================================
debian/tests/run-sample-analysis
=====================================
@@ -6,17 +6,10 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then
   AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
 cd $AUTOPKGTEST_TMP
-cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
 
-PLINK2_TEST='plink2 --file toy'
-
-# Allele frequencies
-$PLINK2_TEST --freq
-diff plink.frq expected.plink.frq
-
-# Case/control or QTL association
-$PLINK2_TEST --assoc
-diff plink.assoc expected.plink.assoc
+plink2 --dummy 33 65537 0.1 dosage-freq=0.1 --out tmp_data
+plink2 --pfile tmp_data --export vcf vcf-dosage=DS --out tmp_data2
+plink2 --vcf tmp_data2.vcf dosage=DS --out tmp_data2
 
 rm -f $AUTOPKGTEST_TMP/*
 



View it on GitLab: https://salsa.debian.org/med-team/plink2/compare/4d31a54fed36ec2a2d3db3e87aad44d45b6c1c0f...ff817ba6026d5d6a4e045a47e2efee5a2eb24c1f

-- 
View it on GitLab: https://salsa.debian.org/med-team/plink2/compare/4d31a54fed36ec2a2d3db3e87aad44d45b6c1c0f...ff817ba6026d5d6a4e045a47e2efee5a2eb24c1f
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