[med-svn] [Git][med-team/metastudent][master] 7 commits: Depends: ncbi-blast+-legacy

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / metastudent


Commits:
8f20a66f by Andreas Tille at 2019-12-11T09:40:28Z
Depends: ncbi-blast+-legacy

- - - - -
edb1e293 by Andreas Tille at 2019-12-11T09:43:36Z
routine-update: Standards-Version: 4.4.1

- - - - -
96d00913 by Andreas Tille at 2019-12-11T09:52:56Z
routine-update: Ready to upload to unstable

- - - - -
08660def by Andreas Tille at 2019-12-11T10:38:12Z
Rename autopkgtest script

- - - - -
76eeb849 by Andreas Tille at 2019-12-11T10:38:43Z
R-U: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g

- - - - -
5b9aa08d by Andreas Tille at 2019-12-11T10:46:52Z
routine-update: Ready to upload to unstable

- - - - -
70416946 by Andreas Tille at 2019-12-11T11:01:34Z
Merge unintended changelog entries

- - - - -


6 changed files:

- debian/README.test
- debian/changelog
- debian/control
- debian/docs
- debian/tests/control
- debian/tests/installation-test → debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -3,7 +3,7 @@ Notes on how this package can be tested.
 
 This package can be tested by executing
 
-    sh installation-test
+    sh run-unit-test
 
 in order to confirm its integrity.
 


=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+metastudent (2.0.1-8) unstable; urgency=medium
+
+  * Team upload.
+  * Depends: ncbi-blast+-legacy
+    Closes: #946538
+  * Standards-Version: 4.4.1
+  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Dec 2019 10:43:44 +0100
+
 metastudent (2.0.1-7) unstable; urgency=medium
 
   [ Jelmer Vernooij ]


=====================================
debian/control
=====================================
@@ -4,12 +4,12 @@ Uploaders: Tobias Hamp <hampt at rostlab.org>,
            Laszlo Kajan <lkajan at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 12)
 Build-Depends-Indep: dh-python,
                      python3-all,
                      javahelper,
                      default-jdk
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/metastudent
 Vcs-Git: https://salsa.debian.org/med-team/metastudent.git
 Homepage: https://rostlab.org/owiki/index.php/Metastudent
@@ -20,7 +20,7 @@ Depends: ${misc:Depends},
          ${perl:Depends},
          ${python3:Depends},
          python3,
-         blast2,
+         ncbi-blast+-legacy,
          default-jre,
          libgo-perl (>= 0.15-3),
          libipc-run-perl,


=====================================
debian/docs
=====================================
@@ -1,2 +1,2 @@
 debian/README.test
-debian/tests/installation-test
+debian/tests/run-unit-test


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
-Tests: installation-test
+Tests: run-unit-test
 Depends: @, @builddeps@, metastudent-data, libgo-perl
 Restrictions: allow-stderr


=====================================
debian/tests/installation-test → debian/tests/run-unit-test
=====================================
@@ -6,12 +6,12 @@ set -e
 
 pkg=metastudent
 
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
 
 cp -a /usr/share/doc/${pkg}/examples/* .
 find . -type f -name "*.gz" -exec gunzip \{\} \;
@@ -21,7 +21,7 @@ for lnk in `find . -type l -name "*.gz"` ; do
 done
 
 # call example from man:
-metastudent -i test.fasta -o test.result.new --temp-dir=$ADTTMP
+metastudent -i test.fasta -o test.result.new --temp-dir=$AUTOPKGTEST_TMP
 [ -z $(cmp -s test.result.BPO.txt test.result.new.BPO.txt) ]
 [ -z $(cmp -s test.result.MFO.txt test.result.new.MFO.txt) ]
 [ -z $(cmp -s test.result.CCO.txt test.result.new.CCO.txt) ]



View it on GitLab: https://salsa.debian.org/med-team/metastudent/compare/da71c52611fe7158feb9b1d6fcb5eec059f092a8...704169465a181b5935d17e6bc764f330c25848f4

-- 
View it on GitLab: https://salsa.debian.org/med-team/metastudent/compare/da71c52611fe7158feb9b1d6fcb5eec059f092a8...704169465a181b5935d17e6bc764f330c25848f4
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