[med-svn] [Git][med-team/seqsero][master] 6 commits: Use 2to3 to port from Python2 to Python3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / seqsero


Commits:
fd86a125 by Andreas Tille at 2019-12-11T15:45:15Z
Use 2to3 to port from Python2 to Python3

- - - - -
2b1239ef by Andreas Tille at 2019-12-11T15:45:48Z
routine-update: debhelper-compat 12

- - - - -
3153e206 by Andreas Tille at 2019-12-11T15:45:57Z
routine-update: Standards-Version: 4.4.1

- - - - -
03dac548 by Andreas Tille at 2019-12-11T15:46:04Z
Set upstream metadata fields: Bug-Database.
- - - - -
58a90791 by Andreas Tille at 2019-12-11T15:48:58Z
Packaging with Python3

- - - - -
53b255c0 by Andreas Tille at 2019-12-11T15:50:42Z
Upload to unstable

- - - - -


7 changed files:

- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/2to3.patch
- debian/patches/series
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+seqsero (1.0.1+dfsg-2) unstable; urgency=medium
+
+  * Use 2to3 to port from Python2 to Python3
+    Closes: #938468
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Set upstream metadata fields: Bug-Database.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Dec 2019 16:49:23 +0100
+
 seqsero (1.0.1+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,21 +3,21 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
-               python,
+               python3,
                bwa,
                sra-toolkit
-Standards-Version: 4.2.1
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/seqsero
 Vcs-Git: https://salsa.debian.org/med-team/seqsero.git
 Homepage: https://github.com/denglab/SeqSero
 
 Package: seqsero
 Architecture: all
-Depends: ${python:Depends},
+Depends: ${python3:Depends},
          ${misc:Depends},
-         python-biopython,
+         python3-biopython,
          bwa,
          samtools,
          sra-toolkit


=====================================
debian/patches/2to3.patch
=====================================
The diff for this file was not included because it is too large.

=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 fix_perl_interpreter.patch
 fix_usage.patch
+2to3.patch


=====================================
debian/rules
=====================================
@@ -3,7 +3,7 @@
 # DH_VERBOSE := 1
 
 %:
-	dh $@ --with python2
+	dh $@ --with python3
 
 override_dh_fixperms:
 	dh_fixperms


=====================================
debian/upstream/metadata
=====================================
@@ -1,28 +1,29 @@
 Reference:
- Author: >
-  Shaokang Zhang and Yanlong Yin and Marcus B. Jones and Zhenzhen Zhang and
-  Brooke L. Deatherage Kaiser and Blake A. Dinsmore and Collette Fitzgerald
-  and Patricia I. Fields and Xiangyu Deng
- Title: >
-  Salmonella Serotype Determination Utilizing High-throughput
-  Genome Sequencing Data
- Journal: Journal of Clinical Microbiology
- Year: 2015
- Volume: 53
- Number: 5
- Pages: 1685-92
- DOI: 10.1128/JCM.00323-15
- PMID: 25762776
- URL: "http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15"
- eprint: >
-  http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15.full.pdf+html
+  Author: >
+    Shaokang Zhang and Yanlong Yin and Marcus B. Jones and Zhenzhen Zhang and
+    Brooke L. Deatherage Kaiser and Blake A. Dinsmore and Collette Fitzgerald
+    and Patricia I. Fields and Xiangyu Deng
+  Title: >
+    Salmonella Serotype Determination Utilizing High-throughput
+    Genome Sequencing Data
+  Journal: Journal of Clinical Microbiology
+  Year: 2015
+  Volume: 53
+  Number: 5
+  Pages: 1685-92
+  DOI: 10.1128/JCM.00323-15
+  PMID: 25762776
+  URL: "http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15"
+  eprint: >
+    http://jcm.asm.org/content/early/2015/03/05/JCM.00323-15.full.pdf+html
 Registry:
- - Name: OMICtools
-   Entry: OMICS_21700
- - Name: bio.tools
-   Entry: NA
- - Name: SciCrunch
-   Entry: NA
- - Name: conda:bioconda
-   Entry: NA
-   Comment: Don't confuse with seqsero2
+- Name: OMICtools
+  Entry: OMICS_21700
+- Name: bio.tools
+  Entry: NA
+- Name: SciCrunch
+  Entry: NA
+- Name: conda:bioconda
+  Entry: NA
+  Comment: Don't confuse with seqsero2
+Bug-Database: https://github.com/denglab/SeqSero/issues



View it on GitLab: https://salsa.debian.org/med-team/seqsero/compare/0873d6907dd9d81409e234c855c3ed7d46d046c9...53b255c016769314b11f648cdbcd9c64fa5f2229

-- 
View it on GitLab: https://salsa.debian.org/med-team/seqsero/compare/0873d6907dd9d81409e234c855c3ed7d46d046c9...53b255c016769314b11f648cdbcd9c64fa5f2229
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