[med-svn] [Git][med-team/seqan][master] 9 commits: Use 2to3 to port from Python2 to Python3
Andreas Tille
gitlab at salsa.debian.org
Mon Dec 16 16:25:34 GMT 2019
Andreas Tille pushed to branch master at Debian Med / seqan
Commits:
900e7867 by Andreas Tille at 2019-12-16T16:21:07Z
Use 2to3 to port from Python2 to Python3
- - - - -
23f45bda by Andreas Tille at 2019-12-16T16:21:33Z
routine-update: debhelper-compat 12
- - - - -
ac4a96b7 by Andreas Tille at 2019-12-16T16:21:37Z
routine-update: Standards-Version: 4.4.1
- - - - -
b39e4dec by Andreas Tille at 2019-12-16T16:24:50Z
R-U: DEB_BUILD_OPTIONS allow override_dh_auto_test
- - - - -
62a97543 by Andreas Tille at 2019-12-16T16:24:50Z
R-U: Trailing whitespace in debian/changelog
- - - - -
cf79b91b by Andreas Tille at 2019-12-16T16:24:50Z
R-U: Trailing whitespace in debian/copyright
- - - - -
d572f041 by Andreas Tille at 2019-12-16T16:24:58Z
Set upstream metadata fields: Bug-Database.
- - - - -
480682f7 by Andreas Tille at 2019-12-16T16:24:59Z
Remove obsolete fields Contact, Name from debian/upstream/metadata.
- - - - -
83441bb8 by Andreas Tille at 2019-12-16T16:25:00Z
Rely on pre-initialized dpkg-architecture variables.
Fixes lintian: debian-rules-sets-dpkg-architecture-variable
See https://lintian.debian.org/tags/debian-rules-sets-dpkg-architecture-variable.html for more details.
- - - - -
8 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/patches/2to3.patch
- debian/patches/series
- debian/rules
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+seqan (1.4.2+dfsg-4) UNRELEASED; urgency=medium
+
+ * Use 2to3 to port from Python2 to Python3
+ Closes: #943260
+ * debhelper-compat 12
+ * Standards-Version: 4.4.1
+ * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+ * Remove trailing whitespace in debian/changelog
+ * Remove trailing whitespace in debian/copyright
+ * Set upstream metadata fields: Bug-Database.
+ * Remove obsolete fields Contact, Name from debian/upstream/metadata.
+ * Rely on pre-initialized dpkg-architecture variables.
+
+ -- Andreas Tille <tille at debian.org> Mon, 16 Dec 2019 17:19:24 +0100
+
seqan (1.4.2+dfsg-3) unstable; urgency=medium
* debhelper 11
@@ -17,7 +32,7 @@ seqan (1.4.2+dfsg-2) unstable; urgency=medium
seqan (1.4.2+dfsg-1) unstable; urgency=medium
- [Andreas Tille]
+ [Andreas Tille]
* New upstream version
Closes: #766741
* Moved packaging to Git
@@ -33,9 +48,9 @@ seqan (1.4.2+dfsg-1) unstable; urgency=medium
Closes: #816988, #809058
* Install cmake files
Closes: #818088
-
+
[Gert Wollny]
- * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841
+ * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841
* d/rules: enable parallel build
-- Andreas Tille <tille at debian.org> Tue, 02 Aug 2016 15:58:06 +0200
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Andreas Tille <tille at debian.org>,
Kevin Murray <spam at kdmurray.id.au>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
cmake,
zlib1g-dev,
libbam-dev,
@@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~),
dh-exec,
help2man,
python
-Standards-Version: 4.1.5
+Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/seqan
Vcs-Git: https://salsa.debian.org/med-team/seqan.git
Homepage: http://www.seqan.de/
=====================================
debian/copyright
=====================================
@@ -144,7 +144,7 @@ License: LGPL-3+
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later version.
- .
+ .
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
=====================================
debian/patches/2to3.patch
=====================================
The diff for this file was not included because it is too large.
=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
skip_extras_and_apps.patch
skip_doc_creation.patch
+2to3.patch
=====================================
debian/rules
=====================================
@@ -8,9 +8,8 @@ export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=-stackprotector
# alternatively: export DEB_CXXFLAGS_STRIP='-fstack-protector'
-DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH)
+include /usr/share/dpkg/architecture.mk
-DEB_BUILD_ARCH ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)
ifneq (,$(filter $(DEB_BUILD_ARCH),mips mipsel))
export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS | sed 's/-O[1-9]//') -O0 -mxgot
endif
@@ -41,12 +40,14 @@ override_dh_auto_clean:
rm -rf orig
override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
# Run test suite only on powerfull architectures (amd64) at build time
ifneq (,$(filter $(DEB_HOST_ARCH),amd64 kfreebsd-amd64))
dh_auto_test
else
echo "Do not run test suite when building on architecture $(DEB_HOST_ARCH)"
endif
+endif
override_dh_fixperms:
dh_fixperms
=====================================
debian/upstream/metadata
=====================================
@@ -1,25 +1,24 @@
-Contact: SeqAn Team (http://www.seqan.de/contact-us.html)
Donation: http://www.seqan.de/
-Name: SeqAn
Reference:
- Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
- Title: SeqAn An efficient, generic C++ library for sequence analysis
- Journal: BMC Bioinformatics
- Volume: 9
- Year: 2008
- Number: 1
- Pages: 11
- DOI: 10.1186/1471-2105-9-11
- PMID: 18184432
- URL: http://www.biomedcentral.com/1471-2105/9/11
- ePrint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf
- ISSN: 1471-2105
+ Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
+ Title: SeqAn An efficient, generic C++ library for sequence analysis
+ Journal: BMC Bioinformatics
+ Volume: 9
+ Year: 2008
+ Number: 1
+ Pages: 11
+ DOI: 10.1186/1471-2105-9-11
+ PMID: 18184432
+ URL: http://www.biomedcentral.com/1471-2105/9/11
+ ePrint: http://www.biomedcentral.com/content/pdf/1471-2105-9-11.pdf
+ ISSN: 1471-2105
Registry:
- - Name: OMICtools
- Entry: OMICS_14825
- - Name: SciCrunch
- Entry: NA
- - Name: conda:bioconda
- Entry: NA
- - Name: bio.tools
- Entry: seqan
+- Name: OMICtools
+ Entry: OMICS_14825
+- Name: SciCrunch
+ Entry: NA
+- Name: conda:bioconda
+ Entry: NA
+- Name: bio.tools
+ Entry: seqan
+Bug-Database: https://github.com/seqan/seqan/issues
View it on GitLab: https://salsa.debian.org/med-team/seqan/compare/0d04b442805fa44d45ea8db20e5c6e94a143d746...83441bb8f212738e97f3faef2176fced68074cc8
--
View it on GitLab: https://salsa.debian.org/med-team/seqan/compare/0d04b442805fa44d45ea8db20e5c6e94a143d746...83441bb8f212738e97f3faef2176fced68074cc8
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