[med-svn] [Git][med-team/libtabixpp][master] 3 commits: routine-update: debhelper-compat 12

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / libtabixpp


Commits:
e2a8385c by Michael R. Crusoe at 2019-12-21T20:59:24Z
routine-update: debhelper-compat 12

- - - - -
702cdeb2 by Michael R. Crusoe at 2019-12-21T20:59:32Z
routine-update: Ready to upload to unstable

- - - - -
58fbe1f4 by Michael R. Crusoe at 2019-12-21T21:11:00Z
symbols: Build-Depends-Package: libhts-dev

- - - - -


5 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/libtabixpp0.symbols
- − tabix.hpp


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+libtabixpp (1.1.0-3) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * debian/libtabixpp0.symbols: Build-Depends-Package: libtabixpp-dev
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sat, 21 Dec 2019 14:02:53 -0700
+
+libtabixpp (1.1.0-2) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper-compat 12
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sat, 21 Dec 2019 13:59:27 -0700
+
 libtabixpp (1.1.0-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,12 +4,12 @@ Uploaders: Andreas Tille <tille at debian.org>,
            Sascha Steinbiss <satta at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                libhts-dev,
                zlib1g-dev,
                libbz2-dev,
                d-shlibs
-Standards-Version: 4.2.1
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/libtabixpp
 Vcs-Git: https://salsa.debian.org/med-team/libtabixpp.git
 Homepage: https://github.com/ekg/tabixpp


=====================================
debian/libtabixpp0.symbols
=====================================
@@ -1,4 +1,5 @@
 libtabixpp.so.0 libtabixpp0 #MINVER#
+* Build-Depends-Package: libtabixpp-dev
  _ZN5Tabix11getNextLineERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.0.0
  _ZN5Tabix13getKstringPtrEv at Base 1.1.0
  _ZN5Tabix13getNextLineKSEv at Base 1.1.0


=====================================
tabix.hpp deleted
=====================================
@@ -1,40 +0,0 @@
-#include <string>
-#include <stdlib.h>
-#include <sys/stat.h>
-#include "htslib/bgzf.h"
-#include "htslib/tbx.h"
-#include "htslib/kseq.h"
-#include <iostream>
-#include <cstring>
-#include <vector>
-
-
-using namespace std;
-
-class Tabix {
-
-    htsFile* fn;
-    tbx_t* tbx;
-    kstring_t str;
-    hts_itr_t* iter;
-    const tbx_conf_t *idxconf;
-    int tid, beg, end;
-    string firstline;
-    bool has_jumped;
-    vector<string>::iterator current_chrom;
-
-public:
-    string filename;
-    vector<string> chroms;
-
-    Tabix(void);
-    Tabix(string& file);
-    ~Tabix(void);
-
-    const kstring_t * getKstringPtr();
-    void getHeader(string& header);
-    bool setRegion(string& region);
-    bool getNextLine(string& line);
-    bool getNextLineKS();
-
-};



View it on GitLab: https://salsa.debian.org/med-team/libtabixpp/compare/aefaf1cc41c62cb88dba0cb46d245887138d6d34...58fbe1f40641d40b3fb438d4885e49795a4a8ae9

-- 
View it on GitLab: https://salsa.debian.org/med-team/libtabixpp/compare/aefaf1cc41c62cb88dba0cb46d245887138d6d34...58fbe1f40641d40b3fb438d4885e49795a4a8ae9
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