[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.1.3

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / bcbio


Commits:
d9e2b213 by Michael R. Crusoe at 2019-02-10T08:40:50Z
New upstream version 1.1.3
- - - - -


30 changed files:

- .travis.yml
- HISTORY.md
- bcbio/bam/__init__.py
- bcbio/bam/callable.py
- bcbio/bam/cram.py
- bcbio/bam/fastq.py
- bcbio/broad/__init__.py
- bcbio/cwl/create.py
- bcbio/cwl/cwlutils.py
- bcbio/cwl/defs.py
- bcbio/cwl/hpc.py
- bcbio/cwl/tool.py
- bcbio/cwl/workflow.py
- bcbio/distributed/multi.py
- bcbio/distributed/objectstore.py
- bcbio/distributed/resources.py
- bcbio/distributed/runfn.py
- bcbio/distributed/split.py
- bcbio/galaxy/api.py
- bcbio/galaxy/nglims.py
- bcbio/graph/graph.py
- bcbio/heterogeneity/bubbletree.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/heterogeneity/loh.py
- bcbio/hla/bwakit.py
- bcbio/illumina/flowcell.py
- bcbio/illumina/machine.py
- bcbio/illumina/samplesheet.py
- bcbio/illumina/transfer.py
- bcbio/install.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/d9e2b213d053cd3071fde18f521f7130cd609da0

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