[med-svn] [Git][med-team/python-skbio][master] 4 commits: Upstream has fixed numpy issue

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / python-skbio


Commits:
41cbdb83 by Andreas Tille at 2019-02-12T18:33:50Z
Upstream has fixed numpy issue

- - - - -
ede60b3e by Andreas Tille at 2019-02-12T18:34:04Z
debhelper 12

- - - - -
60abd893 by Andreas Tille at 2019-02-12T18:34:09Z
Standards-Version: 4.3.0

- - - - -
e6d6590d by Andreas Tille at 2019-02-12T18:48:07Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/compat
- debian/control
- + debian/patches/6497020.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+python-skbio (0.5.5-2) unstable; urgency=medium
+
+  * Upstream has fixed numpy issue
+    Closes: #917693, #918213
+  * debhelper 12
+  * Standards-Version: 4.3.0
+
+ -- Andreas Tille <tille at debian.org>  Tue, 12 Feb 2019 19:34:10 +0100
+
 python-skbio (0.5.5-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/compat
=====================================
@@ -1 +1 @@
-11
+12


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
            Kevin Murray <kdmfoss at gmail.com>
 Section: python
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper (>= 12~),
                dh-python,
                ipython3,
                python3-all-dev,
@@ -28,7 +28,7 @@ Build-Depends: debhelper (>= 11~),
                python3-sphinx,
                python3-sphinx-bootstrap-theme,
                libssw-dev
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/python-skbio
 Vcs-Git: https://salsa.debian.org/med-team/python-skbio.git
 Homepage: https://github.com/biocore/scikit-bio


=====================================
debian/patches/6497020.patch
=====================================
@@ -0,0 +1,25 @@
+From 649702053821de88dfa4e8bb3c25f9fe683c1179 Mon Sep 17 00:00:00 2001
+From: Evan Bolyen <ebolyen at gmail.com>
+Date: Mon, 11 Feb 2019 15:56:16 -0700
+Bug-Debian: https://bugs.debian.org/917693
+Bug-Upstream: https://github.com/biocore/scikit-bio/issues/1648
+Origin: https://github.com/biocore/scikit-bio/commit/6497020
+Subject: [PATCH] BUG: fix ownership for byte/string literals
+
+---
+ skbio/sequence/_sequence.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/skbio/sequence/_sequence.py b/skbio/sequence/_sequence.py
+index 91950ae5a..15fad55bd 100644
+--- a/skbio/sequence/_sequence.py
++++ b/skbio/sequence/_sequence.py
+@@ -630,7 +630,7 @@ def __init__(self, sequence, metadata=None, positional_metadata=None,
+                                 type(sequence).__name__)
+ 
+             sequence = s
+-            self._owns_bytes = True
++            self._owns_bytes = False
+ 
+             self._set_bytes(sequence)
+ 


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ mathjax-path
 0002-use-libsww-as-library-not-embedded-src.patch
 0003-Cherry-pick-upstream-fix-for-numpy-transition.patch
 no_privacy_breach_logo.patch
+6497020.patch



View it on GitLab: https://salsa.debian.org/med-team/python-skbio/compare/9f8bb35f0aa19d7b888dba71827235d936d4c1a3...e6d6590dffe3ec014c11933ca2f37c34ef334c39

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-skbio/compare/9f8bb35f0aa19d7b888dba71827235d936d4c1a3...e6d6590dffe3ec014c11933ca2f37c34ef334c39
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