[med-svn] [Git][med-team/seq-seq-pan][master] 3 commits: Remove binary JAR file

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / seq-seq-pan


Commits:
e24a99b3 by Andreas Tille at 2018-12-10T12:43:05Z
Remove binary JAR file

- - - - -
8ae224a7 by Andreas Tille at 2018-12-10T12:43:22Z
Add install file

- - - - -
4af1ed5b by Andreas Tille at 2018-12-10T12:57:30Z
Python3:Depends

- - - - -


5 changed files:

- debian/control
- debian/copyright
- + debian/docs
- + debian/install
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -10,8 +10,8 @@ Vcs-Git: https://salsa.debian.org/med-team/seq-seq-pan.git
 Homepage: https://gitlab.com/chrjan/seq-seq-pan
 
 Package: seq-seq-pan
-Architecture: any
-Depends: ${shlibs:Depends},
+Architecture: all
+Depends: ${python3:Depends},
          ${misc:Depends}
 Description: workflow for the SEQuential alignment of SEQuences
  Seq-seq-pan is a framework that provides methods for adding or removing


=====================================
debian/copyright
=====================================
@@ -1,6 +1,9 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: seq-seq-pan
 Source: https://gitlab.com/chrjan/seq-seq-pan
+Files-Excluded: */*.jar
+                */.gitignore
+                */.project
 
 Files: *
 Copyright: 2017-2018 Christine Jandrasits <JandrasitsC at rki.de>,


=====================================
debian/docs
=====================================
@@ -0,0 +1 @@
+README*


=====================================
debian/install
=====================================
@@ -0,0 +1,3 @@
+seq-seq-pan*	usr/bin
+seqseqpan	usr/share/seq-seq-pan
+*.py		usr/share/seq-seq-pan


=====================================
debian/rules
=====================================
@@ -20,12 +20,16 @@ include /usr/share/dpkg/default.mk
 %:
 	dh $@
 
+override_dh_install:
+	dh_install
+	# use replacements from conda recipes
+	sed -i 's|$${BASH_SOURCE%/\*}|/usr/share/seq-seq-pan|g' debian/*/usr/bin/seq-seq-pan
+	sed -i 's|$${BASH_SOURCE%/\*}|/usr/share/seq-seq-pan|g' debian/*/usr/bin/seq-seq-pan-consensus
+	sed -i 's|$${BASH_SOURCE%/\*}|/usr/share/seq-seq-pan|g' debian/*/usr/bin/seq-seq-pan-wga
+	sed -i 's|$${BASH_SOURCE%/\*}|/usr/share/seq-seq-pan|g' debian/*/usr/bin/seq-seq-pan-genomedescription
+
 ### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
 #override_dh_auto_test:
 #ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 #	do_stuff_for_testing
 #endif
-
-### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
-#get-orig-source:
-#	. debian/get-orig-source



View it on GitLab: https://salsa.debian.org/med-team/seq-seq-pan/compare/64f94ee5a28bf6dc60165aa68e863e1f5f6e6628...4af1ed5bbefcf8bf6e6d674c43767721564c4747

-- 
View it on GitLab: https://salsa.debian.org/med-team/seq-seq-pan/compare/64f94ee5a28bf6dc60165aa68e863e1f5f6e6628...4af1ed5bbefcf8bf6e6d674c43767721564c4747
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