[med-svn] [Git][med-team/ariba][master] 3 commits: New upstream version 2.13.3+ds

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch master at Debian Med / ariba


Commits:
4d6c0399 by Sascha Steinbiss at 2019-01-05T10:34:29Z
New upstream version 2.13.3+ds
- - - - -
7ae3300a by Sascha Steinbiss at 2019-01-05T10:34:39Z
Merge tag 'upstream/2.13.3+ds'

Upstream version 2.13.3+ds

- - - - -
c19bd830 by Sascha Steinbiss at 2019-01-05T10:35:10Z
new upstream release

- - - - -


5 changed files:

- ariba/tb.py
- + ariba/tb_data/panel.20190102.json
- + ariba/tb_data/panel.20190102.txt
- debian/changelog
- setup.py


Changes:

=====================================
ariba/tb.py
=====================================
@@ -212,8 +212,8 @@ def write_prepareref_metadata_file(mutations, outfile):
 
 def make_prepareref_files(outprefix):
     genbank_file = os.path.join(data_dir, 'NC_000962.3.gb')
-    mut_to_drug_json = os.path.join(data_dir, 'panel.20181221.json')
-    panel_txt_file = os.path.join(data_dir, 'panel.20181221.txt')
+    mut_to_drug_json = os.path.join(data_dir, 'panel.20190102.json')
+    panel_txt_file = os.path.join(data_dir, 'panel.20190102.txt')
     fasta_out = outprefix + '.fa'
     tsv_out = outprefix + '.tsv'
 


=====================================
ariba/tb_data/panel.20190102.json
=====================================
The diff for this file was not included because it is too large.

=====================================
ariba/tb_data/panel.20190102.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+ariba (2.13.3+ds-1) unstable; urgency=medium
+
+  * New upstream release.
+
+ -- Sascha Steinbiss <satta at debian.org>  Sat, 05 Jan 2019 10:34:41 +0000
+
 ariba (2.13.2+ds-1) unstable; urgency=medium
 
   * New upstream release.


=====================================
setup.py
=====================================
@@ -55,7 +55,7 @@ vcfcall_mod = Extension(
 setup(
     ext_modules=[minimap_mod, fermilite_mod, vcfcall_mod],
     name='ariba',
-    version='2.13.2',
+    version='2.13.3',
     description='ARIBA: Antibiotic Resistance Identification By Assembly',
     packages = find_packages(),
     package_data={'ariba': ['test_run_data/*', 'tb_data/*']},



View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/9e9d96b594f4a2a85f82cc3f0e82fea52fde1e99...c19bd8301e626ae122eebb26be31c9d3d4cb64d9

-- 
View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/9e9d96b594f4a2a85f82cc3f0e82fea52fde1e99...c19bd8301e626ae122eebb26be31c9d3d4cb64d9
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190105/46646b0e/attachment-0001.html>