[med-svn] [Git][med-team/libbpp-seq-omics][master] 6 commits: Easier way to provide symbols for amd64 only

Andreas Tille gitlab at salsa.debian.org
Sun Jan 6 18:19:47 GMT 2019 

Andreas Tille pushed to branch master at Debian Med / libbpp-seq-omics


Commits:
4d38996d by Andreas Tille at 2019-01-06T15:45:41Z
Easier way to provide symbols for amd64 only

- - - - -
22053bd7 by Andreas Tille at 2019-01-06T15:48:19Z
Adapt symbols

- - - - -
11a90e2e by Andreas Tille at 2019-01-06T16:09:42Z
Standards-Version: 4.3.0

- - - - -
eb27cf40 by Andreas Tille at 2019-01-06T16:09:43Z
Remove trailing whitespace in debian/copyright

- - - - -
5ccbf2a4 by Andreas Tille at 2019-01-06T16:29:57Z
Spelling

- - - - -
c92393ae by Andreas Tille at 2019-01-06T16:34:09Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/copyright
- debian/libbpp-seq-omics3.symbols → debian/libbpp-seq-omics3.symbols.amd64
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,9 +1,17 @@
-libbpp-seq-omics (2.4.1-2) UNRELEASED; urgency=medium
+libbpp-seq-omics (2.4.1-2) unstable; urgency=medium
 
+  [ Jelmer Vernooij ]
   * Use secure copyright file specification URI.
   * Trim trailing whitespace.
 
- -- Jelmer Vernooij <jelmer at debian.org>  Wed, 24 Oct 2018 22:54:36 +0000
+  [ Andreas Tille ]
+  * Easier way to provide symbols for amd64 only
+  * Adapt symbols
+    Closes: #917591
+  * Standards-Version: 4.3.0
+  * Remove trailing whitespace in debian/copyright
+
+ -- Andreas Tille <tille at debian.org>  Sun, 06 Jan 2019 17:30:24 +0100
 
 libbpp-seq-omics (2.4.1-1) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 11~),
                cmake,
                d-shlibs (>= 0.82),
                libbpp-seq-dev (>= 2.4.1)
-Standards-Version: 4.2.0
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page


=====================================
debian/copyright
=====================================
@@ -19,7 +19,7 @@ License: GPL-2+
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
     (at your option) any later version.
- . 
+ .
     This package is distributed in the hope that it will be useful,
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
@@ -159,7 +159,7 @@ License: CeCILL
  .
  The purpose of the Agreement is the grant by the Licensor to the
  Licensee of a non-exclusive, transferable and worldwide license for the
- Software as set forth in Article 5 hereinafter for the whole term of the 
+ Software as set forth in Article 5 hereinafter for the whole term of the
  protection granted by the rights over said Software.
  .
  .
@@ -179,7 +179,7 @@ License: CeCILL
  characteristics of the Software, to the limited warranty, and to the
  fact that its use is restricted to experienced users has been provided
  to the Licensee prior to its acceptance as set forth in Article 3.1
- hereinabove, and the Licensee hereby acknowledges that it has read and 
+ hereinabove, and the Licensee hereby acknowledges that it has read and
  understood it.
  .
  .
@@ -373,7 +373,7 @@ License: CeCILL
  terms and conditions of such technical assistance, and/or such
  maintenance, shall be set forth in a separate instrument. Only the
  Licensor offering said maintenance and/or technical assistance services
- shall incur liability therefor.
+ shall incur liability therefore.
  .
  7.2 Similarly, any Licensor is entitled to offer to its licensees, under
  its sole responsibility, a warranty, that shall only be binding upon
@@ -427,7 +427,7 @@ License: CeCILL
  9.3 The Licensee acknowledges that the Software is supplied "as is" by
  the Licensor without any other express or tacit warranty, other than
  that provided for in Article 9.2 and, in particular, without any warranty
- as to its commercial value, its secured, safe, innovative or relevant 
+ as to its commercial value, its secured, safe, innovative or relevant
  nature.
  .
  Specifically, the Licensor does not warrant that the Software is free


=====================================
debian/libbpp-seq-omics3.symbols → debian/libbpp-seq-omics3.symbols.amd64
=====================================
@@ -39,7 +39,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZN3bpp12EdSymbolList7shuffleEv at Base 2.4.1
  _ZN3bpp12EdSymbolListixEm at Base 2.4.1
  _ZN3bpp12SequenceMaskC1ERKSt6vectorIbSaIbEEb at Base 2.4.1
- _ZN3bpp12SequenceMaskD0Ev at Base 2.4.1
  _ZN3bpp13AlphabetStateD0Ev at Base 2.4.1
  _ZN3bpp13AlphabetStateD1Ev at Base 2.4.1
  _ZN3bpp13BasicSequenceD0Ev at Base 2.4.1
@@ -346,10 +345,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZNK3bpp12EdSymbolList4sizeEv at Base 2.4.1
  _ZNK3bpp12EdSymbolList5cloneEv at Base 2.4.1
  _ZNK3bpp12EdSymbolListixEm at Base 2.4.1
- _ZNK3bpp12SequenceMask11isRemovableEv at Base 2.4.1
- _ZNK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb at Base 2.4.1
- _ZNK3bpp12SequenceMask7getTypeB5cxx11Ev at Base 2.4.1
- _ZNK3bpp12SequenceMask8isSharedEv at Base 2.4.1
  _ZNK3bpp13AlphabetState5cloneEv at Base 2.4.1
  _ZNK3bpp13CodonAlphabet23getUnknownCharacterCodeEv at Base 2.4.1
  _ZNK3bpp14LetterAlphabet16isCharInAlphabetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
@@ -991,9 +986,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE at Base 2.4.1
  _ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorIiSaIiEE at Base 2.4.1
  _ZTv0_n112_NK3bpp23VectorSequenceContainer20getNumberOfSequencesEv at Base 2.4.1
- _ZTv0_n144_NK3bpp12SequenceMask7getTypeB5cxx11Ev at Base 2.4.1
  _ZTv0_n144_NK3bpp15SequenceQuality7getTypeB5cxx11Ev at Base 2.4.1
- _ZTv0_n152_NK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb at Base 2.4.1
  _ZTv0_n152_NK3bpp15SequenceQuality11isValidWithERKNS_22SequenceWithAnnotationEb at Base 2.4.1
  _ZTv0_n168_NK3bpp12EdSymbolListixEm at Base 2.4.1
  _ZTv0_n168_NK3bpp15BasicSymbolListixEm at Base 2.4.1
@@ -1003,7 +996,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZTv0_n24_N3bpp10BppIntegerD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp11MafSequenceD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp11MafSequenceD1Ev at Base 2.4.1
- _ZTv0_n24_N3bpp12SequenceMaskD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp13AlphabetStateD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp13AlphabetStateD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp13BasicSequenceD0Ev at Base 2.4.1
@@ -1142,7 +1134,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZTv0_n48_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
  _ZTv0_n48_N3bpp36CsvStatisticsOutputIterationListener14iterationStopsEv at Base 2.4.1
  _ZTv0_n48_NK3bpp12EdSymbolList11getAlphabetEv at Base 2.4.1
- _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv at Base 2.4.1
  _ZTv0_n48_NK3bpp15SequenceQuality11isRemovableEv at Base 2.4.1
  _ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv at Base 2.4.1
  _ZTv0_n48_NK3bpp22SequenceWithAnnotation7getNameB5cxx11Ev at Base 2.4.1
@@ -1162,7 +1153,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
  _ZTv0_n56_N3bpp34SiteFrequencySpectrumMafStatistics7computeERKNS_8MafBlockE at Base 2.4.1
  _ZTv0_n56_N3bpp37FourSpeciesPatternCountsMafStatistics7computeERKNS_8MafBlockE at Base 2.4.1
  _ZTv0_n56_NK3bpp12EdSymbolList4sizeEv at Base 2.4.1
- _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv at Base 2.4.1
  _ZTv0_n56_NK3bpp15BasicSymbolList4sizeEv at Base 2.4.1
  _ZTv0_n56_NK3bpp15SequenceQuality8isSharedEv at Base 2.4.1
  _ZTv0_n64_N3bpp16GffFeatureReader21getFeaturesOfSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE at Base 2.4.1


=====================================
debian/rules
=====================================
@@ -9,23 +9,6 @@ CMAKE_EXTRA_FLAGS += -DBUILD_TESTING=OFF
 %:
 	dh $@
 
-override_dh_makeshlibs:
-ifeq ($(DEB_BUILD_ARCH),amd64)
-	echo "Architecture amd64 is the only one where a symbols file is provided"
-else
-	echo "Symbols file for architecture $(DEB_BUILD_ARCH) is not provided"
-	mkdir -p debian/hidesymbols
-	mv debian/*.symbols debian/hidesymbols
-endif
-	dh_makeshlibs
-ifeq ($(DEB_BUILD_ARCH),amd64)
-	echo "dh_makeshlibs for architecture amd64 including symbols done"
-else
-	# restore original debian/ dir to enable building twice in a row
-	mv debian/hidesymbols/*.symbols debian
-	rmdir debian/hidesymbols
-endif
-
 override_dh_install:
 	dh_install
 	d-shlibmove --commit \



View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/compare/73b77ea7fc241edc0489e6d2e95fb728da806f33...c92393aee4c0a750e18b2c31b49a775d050f78bd

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/compare/73b77ea7fc241edc0489e6d2e95fb728da806f33...c92393aee4c0a750e18b2c31b49a775d050f78bd
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