[med-svn] [Git][med-team/sprai][master] 7 commits: debhelper 11

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / sprai


Commits:
8bb7ca5b by Andreas Tille at 2019-01-07T12:09:10Z
debhelper 11

- - - - -
2ca8296c by Andreas Tille at 2019-01-07T12:15:55Z
Point Vcs fields to salsa.debian.org

- - - - -
0ff5f980 by Andreas Tille at 2019-01-07T12:15:55Z
Standards-Version: 4.3.0

- - - - -
4da8b078 by Andreas Tille at 2019-01-07T12:15:56Z
Secure URI in copyright format

- - - - -
0eaab02f by Andreas Tille at 2019-01-07T12:15:56Z
Remove trailing whitespace in debian/copyright

- - - - -
6278e667 by Andreas Tille at 2019-01-07T12:20:09Z
Fix Perl interpreter path

- - - - -
a91652a2 by Andreas Tille at 2019-01-07T12:22:12Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+sprai (0.9.9.23+dfsg-2) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.3.0
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/copyright
+  * Fix Perl interpreter path
+
+ -- Andreas Tille <tille at debian.org>  Mon, 07 Jan 2019 13:20:54 +0100
+
 sprai (0.9.9.23+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/compat
=====================================
@@ -1 +1 @@
-9
+11


=====================================
debian/control
=====================================
@@ -1,29 +1,26 @@
 Source: sprai
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif at debian.org>
-Build-Depends:
-	debhelper (>= 9),
-	python,
-Standards-Version: 4.1.3
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+               python
+Standards-Version: 4.3.0
+Vcs-Browser: https://salsa.debian.org/med-team/sprai
+Vcs-Git: https://salsa.debian.org/med-team/sprai.git
 Homepage: http://zombie.cb.k.u-tokyo.ac.jp/sprai/index.html
-Vcs-Git: https://anonscm.debian.org/git/debian-med/sprai.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sprai.git
 
 Package: sprai
 Architecture: any
-Depends:
-	${shlibs:Depends},
-	${misc:Depends},
-	${perl:Depends},
-	ncbi-blast+ (>= 2.2.27),
-	time,
-Suggests:
-	pbh5tools,
-	pbgenomicconsensus,
-	pbalign,
-	make,
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${perl:Depends},
+         ncbi-blast+ (>= 2.2.27),
+         time
+Suggests: pbh5tools,
+          pbgenomicconsensus,
+          pbalign,
+          make
 Description: single-pass sequencing read accuracy improver
  Sprai is a tool to correct sequencing errors in single-pass reads for
  de novo assembly. It is originally designed for correcting sequencing


=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: sprai
 Upstream-Contact: Takamasa Imai <sprai2017 at gmail.com>
 Source: http://zombie.cb.k.u-tokyo.ac.jp/sprai/Download.html
@@ -45,8 +45,8 @@ License: MIT
  OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
  MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
  IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
- CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, 
- TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE 
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
  SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 
 License: BSD-3-Clause


=====================================
debian/rules
=====================================
@@ -30,6 +30,9 @@ override_dh_install:
 		&& ln -sf $$(basename $$script .pl) $$script; \
 	done
 	dh_install
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
 
 override_dh_installman:
 	dh_installman --language=C



View it on GitLab: https://salsa.debian.org/med-team/sprai/compare/0f1bf61dbab5eb8ad5ed780d48d235e77ffbffeb...a91652a220eaed692444188bd80119ff58252d9b

-- 
View it on GitLab: https://salsa.debian.org/med-team/sprai/compare/0f1bf61dbab5eb8ad5ed780d48d235e77ffbffeb...a91652a220eaed692444188bd80119ff58252d9b
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