[med-svn] [Git][med-team/hhsuite][master] 7 commits: Install context_data.crf

Andreas Tille gitlab at salsa.debian.org
Wed Jan 9 08:17:58 GMT 2019 

Andreas Tille pushed to branch master at Debian Med / hhsuite


Commits:
4495fc49 by Andreas Tille at 2019-01-09T07:44:06Z
Install context_data.crf

- - - - -
26dd09fe by Andreas Tille at 2019-01-09T07:46:55Z
Add autopkgtest reproducing the issue of bug #918765

- - - - -
798d03ee by Andreas Tille at 2019-01-09T07:47:24Z
debhelper 11

- - - - -
f74c1aa9 by Andreas Tille at 2019-01-09T07:48:06Z
Standards-Version: 4.3.0

- - - - -
103d3da9 by Andreas Tille at 2019-01-09T07:48:07Z
Secure URI in copyright format

- - - - -
f7092112 by Andreas Tille at 2019-01-09T07:48:07Z
Remove trailing whitespace in debian/copyright

- - - - -
ffd60294 by Andreas Tille at 2019-01-09T07:53:50Z
Do not parse d/changelog

- - - - -


9 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/hhsuite-data.install
- debian/hhsuite-data.links
- debian/rules
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+hhsuite (3.0~beta3+dfsg-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Install context_data.crf (Thanks for the patch to Andrius Merkys
+    <andrius.merkys at gmail.com>)
+    Closes: #918765
+  * Add autopkgtest reproducing the issue of bug #918765
+  * debhelper 11
+  * Standards-Version: 4.3.0
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/copyright
+  * Do not parse d/changelog
+
+ -- Andreas Tille <tille at debian.org>  Wed, 09 Jan 2019 08:43:24 +0100
+
 hhsuite (3.0~beta3+dfsg-1) unstable; urgency=medium
 
   [ Steffen Moeller ]


=====================================
debian/compat
=====================================
@@ -1 +1 @@
-10
+11


=====================================
debian/control
=====================================
@@ -5,14 +5,14 @@ Uploaders: Laszlo Kajan <lkajan at debian.org>,
            Sascha Steinbiss <satta at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                libffindex0-dev (>= 0.9.9.7+soedinglab),
                cmake,
                texlive-latex-base,
                texlive-latex-recommended,
                imagemagick,
                help2man
-Standards-Version: 4.2.0
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite
 Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git
 Homepage: https://toolkit.tuebingen.mpg.de/


=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: hhsuite
 Upstream-Contact: Andreas Hauser <hauser at genzentrum.lmu.de>
                   Johannes Soeding <soeding at genzentrum.lmu.de>
@@ -49,7 +49,7 @@ License: Sandia
  license for use of this work by or on behalf of the
  U.S. Government. Redistribution and use in source and binary forms, with
  or without modification, are permitted provided that this Notice and any
- statement of authorship are reproduced on all copies. 
+ statement of authorship are reproduced on all copies.
 
 License: GPL-3.0+
  This program is free software: you can redistribute it and/or modify


=====================================
debian/hhsuite-data.install
=====================================
@@ -1,4 +1,2 @@
-usr/data/context_data.lib usr/share/hhsuite/data
+usr/data/context_data.* usr/share/hhsuite/data
 usr/data/cs219.lib usr/share/hhsuite/data
-usr/data/context_data.lib usr/lib/hhsuite/data
-usr/data/cs219.lib usr/lib/hhsuite/data


=====================================
debian/hhsuite-data.links
=====================================
@@ -1,2 +1,3 @@
-usr/share/hhsuite/data/context_data.lib usr/lib/hhsuite/data/context_data.lib
-usr/share/hhsuite/data/cs219.lib usr/lib/hhsuite/data/cs219.lib
+usr/share/hhsuite/data/context_data.lib	usr/lib/hhsuite/data/context_data.lib
+usr/share/hhsuite/data/context_data.crf	usr/lib/hhsuite/data/context_data.crf
+usr/share/hhsuite/data/cs219.lib	usr/lib/hhsuite/data/cs219.lib


=====================================
debian/rules
=====================================
@@ -6,9 +6,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 #export DH_VERBOSE=1
 
 include /usr/share/dpkg/default.mk
-
-TIMESTAMP=$(shell dpkg-parsechangelog -STimestamp)
-DATE=$(shell date --date=@$(TIMESTAMP) '+%d %B %Y')
+DATE=$(shell date --date=@$(SOURCE_DATE_EPOCH) '+%d %B %Y')
 
 HHMANPAGES = hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1
 


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,17 @@
+#!/bin/bash
+set -e
+
+pkg=hhsuite
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/query.a3m.gz $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+
+gunzip query.a3m.gz
+
+hhmake -i query.a3m



View it on GitLab: https://salsa.debian.org/med-team/hhsuite/compare/7023c65c4fb9a0bcbcec479d1f39f02f2e440411...ffd60294bd94f6165f8dc4671b4d9137a29a78e3

-- 
View it on GitLab: https://salsa.debian.org/med-team/hhsuite/compare/7023c65c4fb9a0bcbcec479d1f39f02f2e440411...ffd60294bd94f6165f8dc4671b4d9137a29a78e3
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