[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.1.2

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
6daf8eae by Steffen Möller at 2019-01-17T14:10:30Z
New upstream version 1.1.2
- - - - -


30 changed files:

- .travis.yml
- HISTORY.md
- MANIFEST.in
- bcbio/bam/__init__.py
- bcbio/bam/callable.py
- bcbio/bam/fasta.py
- bcbio/bam/fastq.py
- bcbio/bam/readstats.py
- bcbio/bam/trim.py
- bcbio/broad/__init__.py
- bcbio/broad/metrics.py
- bcbio/broad/picardrun.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/cwl/create.py
- bcbio/cwl/cwlutils.py
- bcbio/cwl/defs.py
- + bcbio/cwl/hpc.py
- bcbio/cwl/main.py
- bcbio/cwl/tool.py
- bcbio/cwl/workflow.py
- + bcbio/data/umis/10x_v2-cb1.txt.gz
- + bcbio/data/umis/10x_v2-transform.json
- − bcbio/data/umis/harvard-indrop-v2-cb1.txt
- + bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz
- − bcbio/data/umis/harvard-indrop-v2-cb2.txt
- + bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz
- − bcbio/data/umis/harvard-indrop-v3-cb1.txt
- + bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/6daf8eae90806c6f5fba09be6ea22ace382278ae

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