[med-svn] [Git][med-team/unicycler][master] 3 commits: Inherit and use LDFLAGS and CPPFLAGS

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / unicycler


Commits:
2623e20a by Michael R. Crusoe at 2019-01-18T10:35:16Z
Inherit and use LDFLAGS and CPPFLAGS

- - - - -
04164425 by Michael R. Crusoe at 2019-01-18T10:35:59Z
Mark unicycler-data as Multi-Arch: foreign, as recommended by the Multiarch hinter.

- - - - -
6d5abf3d by Michael R. Crusoe at 2019-01-18T11:05:29Z
Standards-Version: 4.3.0, no changes needed

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/append_flags
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+unicycler (0.4.7+dfsg-3) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Inherit and use LDFLAGS and CPPFLAGS
+  * Mark unicycler-data as Multi-Arch: foreign, as recommended by the
+    Multiarch hinter.
+  * Standards-Version: 4.3.0, no changes needed
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Fri, 18 Jan 2019 02:34:45 -0800
+
 unicycler (0.4.7+dfsg-2) unstable; urgency=medium
 
   [ Andreas Tille ]


=====================================
debian/control
=====================================
@@ -17,7 +17,7 @@ Build-Depends: debhelper (>= 11~),
                spades,
                libseqan2-dev,
                zlib1g-dev
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/unicycler
 Vcs-Git: https://salsa.debian.org/med-team/unicycler.git
 Homepage: https://github.com/rrwick/Unicycler
@@ -45,6 +45,7 @@ Description: hybrid assembly pipeline for bacterial genomes
 
 Package: unicycler-data
 Architecture: all
+Multi-Arch: foreign
 Depends: ${misc:Depends}
 Description: hybrid assembly pipeline for bacterial genomes (data package)
  Unicycler is an assembly pipeline for bacterial genomes. It can assemble


=====================================
debian/patches/append_flags
=====================================
@@ -0,0 +1,19 @@
+From: Michael R. Crusoe <michael.crusoe at gmail.com>
+Subject: Inherit and use LDFLAGS and CPPFLAGS
+--- unicycler.orig/Makefile
++++ unicycler/Makefile
+@@ -66,7 +66,7 @@
+ 
+ # These flags are required for the build to work.
+ FLAGS        = -std=c++14 -Iunicycler/include -fPIC
+-LDFLAGS      = -shared -lz
++LDFLAGS      += -shared -lz
+ 
+ 
+ # Platform-specific stuff (for Seqan)
+@@ -115,4 +115,4 @@
+ 	$(RM) $(TARGET)
+ 
+ %.o: %.cpp $(HEADERS)
+-	$(CXX) $(FLAGS) $(CXXFLAGS) -c -o $@ $<
++	$(CXX) $(CPPFLAGS) $(FLAGS) $(CXXFLAGS) -c -o $@ $<


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 spades.patch
 # bowtie.patch 
 install_wo_extra_steps.patch
+append_flags



View it on GitLab: https://salsa.debian.org/med-team/unicycler/compare/fd8e7ad4395656f994000318eeea921abfa21b28...6d5abf3dab4928cb6a555eb2b83c2f5eb1b74ecd

-- 
View it on GitLab: https://salsa.debian.org/med-team/unicycler/compare/fd8e7ad4395656f994000318eeea921abfa21b28...6d5abf3dab4928cb6a555eb2b83c2f5eb1b74ecd
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