[med-svn] [Git][med-team/unanimity][master] 6 commits: New upstream version 3.3.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / unanimity


Commits:
e707cab2 by Andreas Tille at 2019-01-24T10:39:12Z
New upstream version 3.3.0+dfsg
- - - - -
4d2777c0 by Andreas Tille at 2019-01-24T10:39:16Z
Update upstream source from tag 'upstream/3.3.0+dfsg'

Update to upstream version '3.3.0+dfsg'
with Debian dir 4b1658e32c42081456b3079ebbf8416d73965b92
- - - - -
29179079 by Andreas Tille at 2019-01-24T10:39:16Z
New upstream version

- - - - -
b4704009 by Andreas Tille at 2019-01-24T10:39:16Z
debhelper 12

- - - - -
22f2bf24 by Andreas Tille at 2019-01-24T10:40:05Z
Standards-Version: 4.3.0

- - - - -
1be08032 by Andreas Tille at 2019-01-24T10:50:24Z
Upload to unstable

- - - - -


4 changed files:

- README.md
- debian/changelog
- debian/compat
- debian/control


Changes:

=====================================
README.md
=====================================
@@ -6,21 +6,10 @@
 
 ***
 ## Availability
-The latest pre-release, developers-only linux binaries can be installed via [bioconda](https://bioconda.github.io/).
+Latest `ccs` can be installed via bioconda package `pbccs`.
 
-    conda install pbccs
-
-These binaries are not ISO compliant.
-For research only.
-Not for use in diagnostics procedures.
-
-Official support is only provided for official and stable
-[SMRT Analysis builds](http://www.pacb.com/products-and-services/analytical-software/)
-provided by PacBio.
-No support for source builds.
-No support via mail to developers.
-
-Binaries on bioconda are newer than GitHub source code.
+Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda)
+for information on Installation, Support, License, Copyright, and Disclaimer.
 
 ## [Circular Consensus Calling](doc/PBCCS.md)
 
@@ -51,6 +40,17 @@ and place them in a subdirectory of `${SMRT_CHEMISTRY_BUNDLE_DIR}`:
 This will cause Unanimity to try to load models from all files in `${SMRT_CHEMISTRY_BUNDLE_DIR}/arrow`
 with a `.json` suffix.
 
+## Changelog
+
+ * **3.3.0**:
+   * Add a windowing approach to reduce computational complexity from quadratic to linear
+   * Improve multi-threading framework to increase throughput
+   * Enhance XML output, propagate `CollectionMetadata`
+   * Includes latest chemistry parameters
+ * 3.1.0:
+   * Add `--maxPoaCoverage` to decrease runtime for unpolished output, special parameter for IsoSeq workflow
+   * Chemistry parameters for SMRT Link v6.0
+
 ## License
 [PacBio open source license](LICENSE)
 


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+unanimity (3.3.0+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+  * debhelper 12
+  * Standards-Version: 4.3.0
+
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jan 2019 11:40:05 +0100
+
 unanimity (3.1.0+dfsg-1) unstable; urgency=medium
 
   * Initial release (Closes: #847310)


=====================================
debian/compat
=====================================
@@ -1 +1 @@
-11
+12


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Afif Elghraoui <afif at debian.org>,
 Section: science
 Testsuite: autopkgtest-pkg-python
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper (>= 12~),
                dh-python,
                cmake,
                swig,
@@ -18,7 +18,7 @@ Build-Depends: debhelper (>= 11~),
                libpbcopper-dev,
                libseqan2-dev,
                pandoc
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/unanimity
 Vcs-Git: https://salsa.debian.org/med-team/unanimity.git
 Homepage: https://github.com/PacificBiosciences/unanimity



View it on GitLab: https://salsa.debian.org/med-team/unanimity/compare/84620b81de797af1dd539723fd3914284e4a0abb...1be0803202feeba740dd461c1a250a2040575a59

-- 
View it on GitLab: https://salsa.debian.org/med-team/unanimity/compare/84620b81de797af1dd539723fd3914284e4a0abb...1be0803202feeba740dd461c1a250a2040575a59
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