[med-svn] [Git][med-team/igv][master] 6 commits: New upstream version 2.4.17+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / igv


Commits:
82fa560c by Andreas Tille at 2019-01-30T13:42:36Z
New upstream version 2.4.17+dfsg
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24f81a16 by Andreas Tille at 2019-01-30T13:44:59Z
Update upstream source from tag 'upstream/2.4.17+dfsg'

Update to upstream version '2.4.17+dfsg'
with Debian dir ce04a3564deb4d074b7149bbe68ed7fca1c21fd4
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ccb28a11 by Andreas Tille at 2019-01-30T13:44:59Z
New upstream version

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43b27824 by Andreas Tille at 2019-01-30T13:44:59Z
debhelper 12

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539c875e by Andreas Tille at 2019-01-30T13:45:03Z
Standards-Version: 4.3.0

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14c7abd0 by Andreas Tille at 2019-01-30T14:18:45Z
Upload to unstable

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30 changed files:

- .gitignore
- + .travis.yml
- README.md
- build.gradle
- build_java9.gradle
- debian/changelog
- debian/compat
- debian/control
- genomes/db/hg19/hg19_annotations.xml
- genomes/genomes.txt
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
- src/main/java/org/broad/igv/maf/MAFIndex.java
- src/main/java/org/broad/igv/maf/MAFParser.java
- src/main/java/org/broad/igv/maf/MAFRenderer.java
- src/main/java/org/broad/igv/maf/MAFtoSAM.java
- src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java
- src/main/java/org/broad/igv/prefs/Constants.java
- src/main/java/org/broad/igv/renderer/SequenceRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentPacker.java
- src/main/java/org/broad/igv/sam/AlignmentRenderer.java
- src/main/java/org/broad/igv/sam/AlignmentTrack.java
- src/main/java/org/broad/igv/sam/reader/BAMReader.java
- src/main/java/org/broad/igv/track/FeatureCollectionSource.java
- src/main/java/org/broad/igv/track/TrackLoader.java
- src/main/java/org/broad/igv/ui/Main.java
- src/main/java/org/broad/igv/ui/commandbar/GenomeListManager.java
- src/main/java/org/broad/igv/util/ResourceLocator.java
- src/main/resources/org/broad/igv/prefs/preferences.tab
- src/test/java/org/broad/igv/feature/ProbeToGeneMapTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/compare/eaa4f44b997ae1463e5c3a59a319578e2789c608...14c7abd0b1b6ad8479b104f4400184af7d729921

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/compare/eaa4f44b997ae1463e5c3a59a319578e2789c608...14c7abd0b1b6ad8479b104f4400184af7d729921
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