[med-svn] [Git][med-team/mindthegap][master] 3 commits: First stage of creating an additional "sub"package. Rectify mindthegap.install...

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / mindthegap


Commits:
13fe2c70 by Shayan Doust at 2019-07-10T18:13:39Z
First stage of creating an additional "sub"package. Rectify mindthegap.install to prevent dh_missing from complaining

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82e1d2d9 by Shayan Doust at 2019-07-10T19:08:07Z
Fix spelling mistake & misc edit on mindthegap.install

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e24d2fa2 by Shayan Doust at 2019-07-10T19:09:00Z
Create mindthegap-examples listing file src locations & their desired location

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3 changed files:

- debian/control
- + debian/mindthegap-examples.install
- debian/mindthegap.install


Changes:

=====================================
debian/control
=====================================
@@ -29,3 +29,22 @@ Description: Performs detection and assembly of DNA insertion variants in NGS re
  tool. It can fill the gaps between a set of input contigs without any a
  priori on their relative order and orientation. It outputs the results
  in gfa file.
+
+Package: mindthegap-examples
+Architecture: all
+Depends: ${shlibs:Depends},
+	 ${misc:Depends},
+	 ${python3:Depends}
+	 mindthegap
+Description: Optional scripts and example resources for mindthegap.
+ Designed to call insertions of any size, whether they are novel or
+ duplicated, homozygous or heterozygous in the donor genome. it takes
+ as input a set of reads and a reference genome. It outputs two sets
+ of FASTA sequences: one is the set of breakpoints of detection
+ insertion sites, the other is the set of assembled insertions for
+ each breakpoint. MindTheGap can also be used as a genome assembly
+ finishing tool. It can fill the gap between a set of input contigs
+ without any a priori on their relative order and orientation. It
+ outputs the results in gfa file. Please note that this package is
+ meant to accommodate the mindthegap package and only acts as example
+ to how this package can be utilised.


=====================================
debian/mindthegap-examples.install
=====================================
@@ -0,0 +1,4 @@
+scripts usr/share/doc/mindthegap
+test/scripts usr/share/doc/mindthegap
+test/vde.py usr/share/doc/mindthegap
+


=====================================
debian/mindthegap.install
=====================================
@@ -5,7 +5,6 @@ test/references usr/share/mindthegap/test
 test/truths usr/share/mindthegap/test
 test/*.sh usr/share/mindthegap/test
 test/eval.cpp usr/share/mindthegap/test
-test/vde.py usr/share/mindthegap/test
 test/contig_test/*.fasta usr/share/mindthegap/test/contig_test
 test/contig_test/*.info.txt usr/share/mindthegap/test/contig_test
 test/contig_test/*gfa usr/share/mindthegap/test/contig_test
@@ -15,8 +14,7 @@ test/full_test/*.breakpoints usr/share/mindthegap/test/full_test
 test/full_test/*.output usr/share/mindthegap/test/full_test
 test/full_test/*.*.vcf usr/share/mindthegap/test/full_test
 data usr/share/mindthegap
-scripts usr/share/doc/mindthegap
 CHANGELOG.md usr/share/doc/mindthegap
 README.md usr/share/doc/mindthegap
-
+debian/tmp/usr/bin/MindTheGap usr/bin
 



View it on GitLab: https://salsa.debian.org/med-team/mindthegap/compare/bfc8320bb0306850eb39f5ef8bf4162aa119f1a3...e24d2fa2bf1113a7984b53ffaae8dae384cb8c0f

-- 
View it on GitLab: https://salsa.debian.org/med-team/mindthegap/compare/bfc8320bb0306850eb39f5ef8bf4162aa119f1a3...e24d2fa2bf1113a7984b53ffaae8dae384cb8c0f
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