[med-svn] [Git][med-team/bcbio][master] python3-geneimpacts got accepted

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
b5831fd6 by Steffen Möller at 2019-07-11T04:59:59Z
python3-geneimpacts got accepted

- - - - -


2 changed files:

- debian/TODO
- debian/control


Changes:

=====================================
debian/TODO
=====================================
@@ -28,11 +28,6 @@ package bamtofastq from biobambam2
 
 package kallisto (in new queue)
 
-package Python module geneimpacts
-   https://pypi.org/project/geneimpacts/
-   https://github.com/brentp/geneimpacts
-   https://salsa.debian.org/med-team/python-geneimpacts (in new queue)
-
 package pizzly
    https://github.com/pmelsted/pizzly (in new queue)
 
@@ -96,7 +91,7 @@ package viennarna
        The package now has a custom license file - redistributable but non-free.
     Needed for testing seqcluster.
 	Steffen revisits ViennaRNA, will update to new upstream version this weekend
-           Does not compile - source tree seems incomplete (RNAfold_cmdl.c missing)
+           Does not compile
            External dependencies json (in Debian, I think, can otherwise be deconfigured) and cthreadpool (not yet in Debian) need to be addressed
 
 package cthreadpool


=====================================
debian/control
=====================================
@@ -32,6 +32,7 @@ Build-Depends: debhelper (>= 10),
                picard,
                python3-biopython,
                python3-cyvcf2,
+               python3-geneimpacts,
                python3-logbook,
                python3-nose,
                python3-requests,



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/b5831fd60db7a3b4f3382c5e84c98af925253378

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/b5831fd60db7a3b4f3382c5e84c98af925253378
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