[med-svn] [Git][med-team/mcl][master] Add workflow information to README

[Saira Hussain]

Saira Hussain pushed to branch master at Debian Med / mcl


Commits:
737ef382 by Saira Hussain at 2019-07-11T13:26:25Z
Add workflow information to README

- - - - -


2 changed files:

- + debian/tests/README
- debian/tests/data/README


Changes:

=====================================
debian/tests/README
=====================================
@@ -0,0 +1,14 @@
+In order to get a FASTA file from all the Skunavirus genomes, the NCBI database was used:
+https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Skunavirus,%20taxid:1623305
+
+Select Download, Select Data Type (Sequence Data/FASTA Format)
+
+The rest of the data is generated with this workflow in mind:
+
+1. Using the package prodigal to generate a database file
+2. Using awk to filter this
+3. Using mcl to generate protein families
+4. Using a custom python script to do pairwise comparisons
+5. Out of the files generated in the previous step, I am using mcl again to build clusters of genomes.
+
+You can find more details inside the LMCLUST.sh


=====================================
debian/tests/data/README
=====================================
@@ -1,5 +1,14 @@
 In order to get a FASTA file from all the Skunavirus genomes, the NCBI database was used:
-
 https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Skunavirus,%20taxid:1623305
 
 Select Download, Select Data Type (Sequence Data/FASTA Format)
+
+The rest of the data is generated with this workflow in mind:
+
+1. Using the package prodigal to generate a database file
+2. Using awk to filter this
+3. Using mcl to generate protein families
+4. Using a custom python script to do pairwise comparisons
+5. Out of the files generated in the previous step, I am using mcl again to build clusters of genomes.
+
+You can find more details inside the LMCLUST.sh



View it on GitLab: https://salsa.debian.org/med-team/mcl/commit/737ef382a857c36142a18f0f685a7a4ead768b1a

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View it on GitLab: https://salsa.debian.org/med-team/mcl/commit/737ef382a857c36142a18f0f685a7a4ead768b1a
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