[med-svn] [Git][med-team/mmseqs2][master] 2 commits: Use system-wide gzstream instead of that in lib dir.

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / mmseqs2


Commits:
410482f1 by Shayan Doust at 2019-07-15T18:45:39Z
Use system-wide gzstream instead of that in lib dir.

- - - - -
d91869f6 by Shayan Doust at 2019-07-15T18:57:30Z
Add description to the patch

- - - - -


3 changed files:

- debian/control
- + debian/patches/series
- + debian/patches/use_system_gzstream.patch


Changes:

=====================================
debian/control
=====================================
@@ -3,7 +3,9 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Shayan Doust <hello at shayandoust.me>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 12~)
+Build-Depends: debhelper (>= 12~),
+	       cmake,
+	       libgzstream-dev
 Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2
 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+use_system_gzstream.patch


=====================================
debian/patches/use_system_gzstream.patch
=====================================
@@ -0,0 +1,30 @@
+Description: We use libgzstream-dev instead of that in lib
+Author: Shayan Doust <hello at shayandoust.me>
+Last-Update: 2019-07-15
+---
+Index: mmseqs2/CMakeLists.txt
+===================================================================
+--- mmseqs2.orig/CMakeLists.txt
++++ mmseqs2/CMakeLists.txt
+@@ -79,7 +79,6 @@ add_subdirectory(lib/tinyexpr EXCLUDE_FR
+ include_directories(lib)
+ include_directories(lib/kseq)
+ include_directories(lib/simd)
+-include_directories(lib/gzstream)
+ include_directories(lib/alp)
+ include_directories(lib/cacode)
+ include_directories(lib/ksw2)
+Index: mmseqs2/src/CMakeLists.txt
+===================================================================
+--- mmseqs2.orig/src/CMakeLists.txt
++++ mmseqs2/src/CMakeLists.txt
+@@ -144,6 +144,9 @@ endif ()
+ # tinyexpr
+ target_link_libraries(mmseqs-framework tinyexpr)
+ 
++# System-wide gzstream
++target_link_libraries(mmseqs-framework gzstream)
++
+ find_package(ZLIB QUIET)
+ if (ZLIB_FOUND)
+     message("-- Found ZLIB")



View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/c84c0ea1873aa64215d9014f88ec63bf43ee424f...d91869f6b66f2d020e8d3bcdd6ddbc8644fe9463

-- 
View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/c84c0ea1873aa64215d9014f88ec63bf43ee424f...d91869f6b66f2d020e8d3bcdd6ddbc8644fe9463
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