[med-svn] [Git][med-team/mmseqs2][master] 2 commits: Include-binaries to reflect on some pptx and images

Shayan Doust gitlab at salsa.debian.org
Fri Jul 19 18:34:35 BST 2019 


Shayan Doust pushed to branch master at Debian Med / mmseqs2


Commits:
c82d0645 by Shayan Doust at 2019-07-19T15:24:20Z
Include-binaries to reflect on some pptx and images
These are used to generate the PDF documentation hence source

- - - - -
18e82408 by Shayan Doust at 2019-07-19T17:32:30Z
Split optional files into mmseqs2-examples.
Files will be installed under /usr/share/doc/mmseqs2 as these are informational

- - - - -


19 changed files:

- debian/control
- + debian/missing-sources/userguide/images/cluster-cascaded-clustering-workflow.png
- + debian/missing-sources/userguide/images/cluster-mode-connectedcomp.png
- + debian/missing-sources/userguide/images/cluster-mode-greedyincremental.png
- + debian/missing-sources/userguide/images/cluster-mode-setcover.png
- + debian/missing-sources/userguide/images/cluster-updating-workflow.png
- + debian/missing-sources/userguide/images/kclust-supp-fig2-spc-vs-seqid.jpg
- + debian/missing-sources/userguide/images/linclust-algorithm.png
- + debian/missing-sources/userguide/images/mmseqs2-logo.png
- + debian/missing-sources/userguide/images/mmseqs2-prefilter.png
- + debian/missing-sources/userguide/images/mmseqs2-search.png
- + debian/missing-sources/userguide/images/mmseqs2-sense.png
- + debian/missing-sources/userguide/images/search-workflow.png
- + debian/missing-sources/userguide/images/taxonomy-2blca-protocol.png
- + debian/missing-sources/userguide/images/taxonomy-2blca-protocol.pptx
- + debian/missing-sources/userguide/userguide.pdf
- + debian/mmseqs2-examples.install
- debian/mmseqs2.install
- + debian/source/include-binaries


Changes:

=====================================
debian/control
=====================================
@@ -4,10 +4,10 @@ Uploaders: Shayan Doust <hello at shayandoust.me>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 12~),
-	       cmake,
-	       libgzstream-dev,
-	       libzstd-dev,
-	       zlib1g-dev
+               cmake,
+               libgzstream-dev,
+               libzstd-dev,
+               zlib1g-dev
 Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2
 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git
@@ -26,3 +26,17 @@ Description: ultra fast and sensitive protein search and clustering.
  MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
  achieves almost the same sensitivity. It can perform profile searches
  with the same sensitivity as PSI-BLAST at over 400 times its speed.
+
+Package: mmseqs2-examples
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: mmseqs2
+Description: optional resources for the mmseqs2 package
+ MMseqs2 (Many-against-Many sequence searching) is a software suite to
+ search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is
+ open source GPL-licensed software implemented in C++ for Linux, MacOS,
+ and (as beta version, via cygwim) Windows. The software is designed to
+ run on multiple cores and servers and exhibits very good scalability.
+ MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it
+ achieves almost the same sensitivity. It can perform profile searches
+ with the same sensitivity as PSI-BLAST at over 400 times its speed.


=====================================
debian/missing-sources/userguide/images/cluster-cascaded-clustering-workflow.png
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debian/missing-sources/userguide/images/cluster-mode-connectedcomp.png
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debian/missing-sources/userguide/images/cluster-mode-greedyincremental.png
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debian/missing-sources/userguide/images/cluster-mode-setcover.png
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debian/missing-sources/userguide/images/cluster-updating-workflow.png
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=====================================
debian/missing-sources/userguide/images/kclust-supp-fig2-spc-vs-seqid.jpg
=====================================
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=====================================
debian/missing-sources/userguide/images/linclust-algorithm.png
=====================================
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=====================================
debian/missing-sources/userguide/images/mmseqs2-logo.png
=====================================
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=====================================
debian/missing-sources/userguide/images/mmseqs2-prefilter.png
=====================================
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=====================================
debian/missing-sources/userguide/images/mmseqs2-search.png
=====================================
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=====================================
debian/missing-sources/userguide/images/mmseqs2-sense.png
=====================================
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=====================================
debian/missing-sources/userguide/images/search-workflow.png
=====================================
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=====================================
debian/missing-sources/userguide/images/taxonomy-2blca-protocol.png
=====================================
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=====================================
debian/missing-sources/userguide/images/taxonomy-2blca-protocol.pptx
=====================================
Binary files /dev/null and b/debian/missing-sources/userguide/images/taxonomy-2blca-protocol.pptx differ


=====================================
debian/missing-sources/userguide/userguide.pdf
=====================================
Binary files /dev/null and b/debian/missing-sources/userguide/userguide.pdf differ


=====================================
debian/mmseqs2-examples.install
=====================================
@@ -0,0 +1,2 @@
+examples/* usr/share/doc/mmseqs2/example-data
+data/* usr/share/doc/mmseqs2/example-data


=====================================
debian/mmseqs2.install
=====================================
@@ -1,5 +1,5 @@
 obj-x86_64-linux-gnu/src/test usr/lib/mmseqs2
 util/bash-completion.sh usr/share/mmseqs2
 README.md usr/share/doc/mmseqs2
-examples/* usr/share/doc/mmseqs2/example-data
-data/* usr/share/doc/mmseqs2/example-data
+debian/missing-sources/userguide/userguide.pdf usr/share/doc/mmseqs2
+debian/tmp/usr/bin/mmseqs usr/bin


=====================================
debian/source/include-binaries
=====================================
@@ -0,0 +1,15 @@
+debian/missing-sources/userguide/images/cluster-mode-connectedcomp.png
+debian/missing-sources/userguide/images/kclust-supp-fig2-spc-vs-seqid.jpg
+debian/missing-sources/userguide/images/mmseqs2-sense.png
+debian/missing-sources/userguide/images/search-workflow.png
+debian/missing-sources/userguide/images/mmseqs2-prefilter.png
+debian/missing-sources/userguide/images/cluster-cascaded-clustering-workflow.png
+debian/missing-sources/userguide/images/cluster-updating-workflow.png
+debian/missing-sources/userguide/images/cluster-mode-setcover.png
+debian/missing-sources/userguide/images/taxonomy-2blca-protocol.png
+debian/missing-sources/userguide/images/mmseqs2-search.png
+debian/missing-sources/userguide/images/cluster-mode-greedyincremental.png
+debian/missing-sources/userguide/images/mmseqs2-logo.png
+debian/missing-sources/userguide/images/linclust-algorithm.png
+debian/missing-sources/userguide/images/taxonomy-2blca-protocol.pptx
+debian/missing-sources/userguide/userguide.pdf



View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/636cb533cd08114d7628f033ab4463c0b6626079...18e82408e17a45a4653d0d1b49a98b7ee5299288

-- 
View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/compare/636cb533cd08114d7628f033ab4463c0b6626079...18e82408e17a45a4653d0d1b49a98b7ee5299288
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