[med-svn] [Git][med-team/norsnet][master] Add shipped in example data files to test

[Saira Hussain]

Saira Hussain pushed to branch master at Debian Med / norsnet


Commits:
4ae2b5be by Saira Hussain at 2019-07-31T10:37:09Z
Add shipped in example data files to test

- - - - -


1 changed file:

- debian/tests/run-unit-tests


Changes:

=====================================
debian/tests/run-unit-tests
=====================================
@@ -1,7 +1,7 @@
 #!/bin/bash
 set -e
 
-pkg=mcl
+pkg=norsnet
 
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
@@ -19,22 +19,8 @@ gunzip -r *
 # Just for debugging
 set -x
 
-#Generation of protein families
-mcxload -abc protein_graphs.txt --stream-mirror --stream-neg-log10 -stream-tf 'ceil(200)' -o protein_graphs.mci -write-tab protein_graphs.tab
+# Run the shipped example data files
+norsnet cad23.f cad23-fil.rdbProf cad23-fil.hssp cad23.norsnet cad23 cad23.profbval
 
-mcl protein_graphs.mci -I 2
 
-mcxdump -icl out.protein_graphs.mci.I20 -tabr protein_graphs.tab -o clusters.protein_graphs.mci.I20
 
-#Building clusters of genomes
-mcxload -abc genome_graphs.txt --stream-mirror -o genome_graphs.mci -write-tab genome_graphs.tab
-
-mcl genome_graphs.mci -I 1.2
-
-mcl genome_graphs.mci -I 2
-mcl genome_graphs.mci -I 4
-mcl genome_graphs.mci -I 6
-mcxdump -icl out.genome_graphs.mci.I12 -tabr genome_graphs.tab -o clusters.genome.mci.I12
-mcxdump -icl out.genome_graphs.mci.I20 -tabr genome_graphs.tab -o clusters.genome.mci.I20
-mcxdump -icl out.genome_graphs.mci.I40 -tabr genome_graphs.tab -o clusters.genome.mci.I40
-mcxdump -icl out.genome_graphs.mci.I60 -tabr genome_graphs.tab -o clusters.genome.mci.I60



View it on GitLab: https://salsa.debian.org/med-team/norsnet/commit/4ae2b5be9438b15309cefc45821053fde23f80e0

-- 
View it on GitLab: https://salsa.debian.org/med-team/norsnet/commit/4ae2b5be9438b15309cefc45821053fde23f80e0
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