[med-svn] [Git][med-team/cdbfasta][master] Final unit tests

[Saira Hussain]

Saira Hussain pushed to branch master at Debian Med / cdbfasta


Commits:
39d0e6d7 by Saira Hussain at 2019-07-31T14:20:10Z
Final unit tests

- - - - -


1 changed file:

- debian/tests/run-unit-tests


Changes:

=====================================
debian/tests/run-unit-tests
=====================================
@@ -20,16 +20,13 @@ gunzip -r *
 set -x
 
 # Create the index file for a multi-FASTA
-cdbfasta 
+cdbfasta ebola.fasta
 
 # Pull records based on the index file
-cdbyank
-
-# Retrieve records from the database file
-cdbyank -a ''
+cdbyank -a "Cote_d'Ivoire_ebolavirus,_complete_genome" ebola.fasta.cidx
 
 # Retrieve specific sequence ranges
-cdbyank -a '' <right_coo> <left_coo>
+cdbyank -a "Cote_d'Ivoire_ebolavirus,_complete_genome 32 112" -R ebola.fasta.cidx
 
 # Test the compression
-
+cdbfasta ebola.fasta -z ebola.cdbz



View it on GitLab: https://salsa.debian.org/med-team/cdbfasta/commit/39d0e6d7f4a24add155d10d10db831bd918bc8df

-- 
View it on GitLab: https://salsa.debian.org/med-team/cdbfasta/commit/39d0e6d7f4a24add155d10d10db831bd918bc8df
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