[med-svn] [Git][med-team/libarb][master] 3 commits: Skip calling script not available here.
Andreas Tille
gitlab at salsa.debian.org
Fri Jun 7 08:42:19 BST 2019
Andreas Tille pushed to branch master at Debian Med / libarb
Commits:
dcc5779b by Andreas Tille at 2019-06-07T07:25:36Z
Skip calling script not available here.
- - - - -
516e6184 by Andreas Tille at 2019-06-07T07:34:57Z
Build SL/PTCLEAN
- - - - -
750c0303 by Andreas Tille at 2019-06-07T07:41:18Z
Move patches to proper patch file
- - - - -
2 changed files:
- debian/patches/fix_main_makefile.patch
- debian/patches/ignore_unneeded_stuff.patch
Changes:
=====================================
debian/patches/fix_main_makefile.patch
=====================================
@@ -135,6 +135,24 @@
forcelinks:
-rm $(LINKSTAMP)
+@@ -1676,7 +1624,7 @@ redo_links: clean_links
+ #********************************************************************************
+
+ header_libs:
+- $(MAKE) -C HEADERLIBS all
++ echo "No headerlibs - just create libarb core" # $(MAKE) -C HEADERLIBS all
+
+ #********************************************************************************
+
+@@ -1708,7 +1656,7 @@ endif
+
+
+ binlink:
+- $(MAKE) -C bin $(BIN_TARGET)
++ echo "No binaries, build library only" # $(MAKE) -C bin $(BIN_TARGET)
+
+ preplib:
+ (cd lib;$(MAKE) all)
@@ -1728,7 +1676,7 @@ preplib:
ifeq ($(WITHPERL),1)
links_non_perl: PERLTOOLS/PERLTOOLS.dummy
@@ -234,7 +252,27 @@
$(MAKE) build
tarfile: rebuild
-@@ -1979,9 +1907,9 @@ arbapplications: nt pa e4 wetc pt na nal
+@@ -1914,7 +1842,8 @@ patch:
+
+ # test early whether save will work
+ savetest:
+- @util/arb_srclst.pl >/dev/null
++ # @util/arb_srclst.pl >/dev/null
++ echo "No idea what util/arb_srclst.pl is doing - not in libarb source for Debian"
+
+ testsave: savetest
+
+@@ -1926,7 +1855,8 @@ save2: rmbak
+
+ save_test: rmbak
+ @echo "Testing source list.."
+- @util/arb_srclst.pl > /dev/null
++ # @util/arb_srclst.pl > /dev/null
++ echo "No idea what util/arb_srclst.pl is doing - not in libarb source for Debian"
+
+ save_test_no_error:
+ @-$(MAKE) save_test
+@@ -1979,10 +1909,10 @@ arbapplications: nt pa e4 wetc pt na nal
arb_external: convert tools gde readseq tg pst xmlin
@@ -242,11 +280,13 @@
+arb_no_perl: arbapplications arb_external
-arb: motif_xpm_hack
+- $(MAKE) "WITHPERL=1" perl arb_no_perl
+arb:
- $(MAKE) "WITHPERL=1" perl arb_no_perl
++ $(MAKE) "WITHPERL=1" perl # arb_no_perl
motif_xpm_hack:
-@@ -2121,7 +2049,6 @@ UNITS_TESTED = \
+ $(MAKE) -r -C "lib/motifHack" all
+@@ -2121,7 +2051,6 @@ UNITS_TESTED = \
SL/FAST_ALIGNER/FAST_ALIGNER.test \
SL/PRONUC/PRONUC.test \
WINDOW/libWINDOW.test \
@@ -254,12 +294,12 @@
CONVERTALN/CONVERTALN.test \
SL/SEQIO/SEQIO.test \
SL/PTCLEAN/PTCLEAN.test \
-@@ -2312,7 +2239,7 @@ post_commit_check:
+@@ -2312,7 +2241,7 @@ post_commit_check:
# --------------------------------------------------------------------------------
build: arb
- $(MAKE) binlink preplib compile_compatibility
-+ $(MAKE) core db SL/HELIX/HELIX.dummy
++ $(MAKE) core db SL/HELIX/HELIX.dummy SL/PTCLEAN/PTCLEAN.dummy
all:
@echo "Build time" > $(TIMELOG)
=====================================
debian/patches/ignore_unneeded_stuff.patch
=====================================
@@ -171,32 +171,3 @@
defined $short_version || die "expected known short_version!";
defined $revision || die "expected known revision!";
---- a/Makefile
-+++ b/Makefile
-@@ -1624,7 +1624,7 @@ redo_links: clean_links
- #********************************************************************************
-
- header_libs:
-- $(MAKE) -C HEADERLIBS all
-+ echo "No headerlibs - just create libarb core" # $(MAKE) -C HEADERLIBS all
-
- #********************************************************************************
-
-@@ -1656,7 +1656,7 @@ endif
-
-
- binlink:
-- $(MAKE) -C bin $(BIN_TARGET)
-+ echo "No binaries, build library only" # $(MAKE) -C bin $(BIN_TARGET)
-
- preplib:
- (cd lib;$(MAKE) all)
-@@ -1910,7 +1910,7 @@ arb_external: convert tools gde readseq
- arb_no_perl: arbapplications arb_external
-
- arb:
-- $(MAKE) "WITHPERL=1" perl arb_no_perl
-+ $(MAKE) "WITHPERL=1" perl # arb_no_perl
-
- motif_xpm_hack:
- $(MAKE) -r -C "lib/motifHack" all
View it on GitLab: https://salsa.debian.org/med-team/libarb/compare/5f2fa6a111dc4f2280582168489c75a865d5e976...750c0303770c75c853296310866457d19c5b840f
--
View it on GitLab: https://salsa.debian.org/med-team/libarb/compare/5f2fa6a111dc4f2280582168489c75a865d5e976...750c0303770c75c853296310866457d19c5b840f
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