[med-svn] [Git][med-team/bcbio][master] pizzly is in new queue, general updates

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
e32bd3ad by Steffen Möller at 2019-06-07T09:50:17Z
pizzly is in new queue, general updates

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -27,10 +27,10 @@ package hts_nim_tools
    Likely addressed with the other efforts on nim behind mosdepth
 
 package qsignature
-https://sourceforge.net/p/adamajava/wiki/Home/
-https://sourceforge.net/p/adamajava/wiki/qSignature/
-http://sourceforge.net/projects/adamajava/files/qsignature.tar.bz2/download
-https://sourceforge.net/p/adamajava/code/HEAD/tree/trunk/adamajava/qsignature/
+   https://sourceforge.net/p/adamajava/wiki/Home/
+   https://sourceforge.net/p/adamajava/wiki/qSignature/
+   http://sourceforge.net/projects/adamajava/files/qsignature.tar.bz2/download
+   https://sourceforge.net/p/adamajava/code/HEAD/tree/trunk/adamajava/qsignature/
 
 package optitype
   https://salsa.debian.org/med-team/optitype (rudimentary)
@@ -66,7 +66,7 @@ add hisat2_extract_splice_sites.py to the hisat2 package
 
 Package MutliQC - in salsa
    https://salsa.debian.org/med-team/multiqc
-     Who is responsible for this one?
+     Nobody active on this one - needs some peer review and upload
 
 package sailfish
    https://salsa.debian.org/med-team/sailfish
@@ -79,7 +79,7 @@ package r-wasabi
 
 package oncofuse
    https://salsa.debian.org/med-team/oncofuse
-    @Andreas, please add a TODO if not ready
+     Nobody active on this one - needs some peer review and upload
 
 package Python module geneimpacts
    https://pypi.org/project/geneimpacts/
@@ -88,11 +88,14 @@ package Python module geneimpacts
 
 package seqcluster
    https://github.com/lpantano/seqcluster/archive/1824d37.tar.gz
+   https://salsa.debian.org/med-team/python-seqcluster
+      Some nitty-gritty was going on there wrt Python3 transition
+      and an upcoming new release. Needs another review and
+      likely some communication with upstream.
+
 
 package pizzly
-   https://github.com/pmelsted/pizzly
-   https://salsa.debian.org/med-team/pizzly (fails in pbuilder - help requested)
-    still needs to include pizzly_flatten_json.py
+   https://github.com/pmelsted/pizzly (in new queue)
 
 package vt
    https://github.com/atks/vt



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/e32bd3ad1024ac7989732c7e547b63f0b0062d32

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