[med-svn] [Git][med-team/roary][master] support Bioperl >= 1.7.4

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch master at Debian Med / roary


Commits:
5c5a8b4a by Sascha Steinbiss at 2019-06-08T10:21:39Z
support Bioperl >= 1.7.4

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/new-bioperl-require.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+roary (3.12.0+dfsg-3) unstable; urgency=medium
+
+  * Fix support for BioPerl 1.7.4 package currently in unstable.
+
+ -- Sascha Steinbiss <satta at debian.org>  Sat, 08 Jun 2019 11:52:37 +0200
+
 roary (3.12.0+dfsg-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Priority: optional
 Build-Depends: debhelper (>= 11~),
                dh-dist-zilla,
                libdist-zilla-plugin-podweaver-perl,
-               bioperl,
+               bioperl (>= 1.7.4),
                libarray-utils-perl,
                libenv-path-perl,
                libexception-class-perl,
@@ -44,7 +44,7 @@ Package: roary
 Architecture: all
 Depends: ${perl:Depends},
          ${misc:Depends},
-         bioperl,
+         bioperl (>= 1.7.4),
          libarray-utils-perl,
          libdigest-md5-file-perl,
          libenv-path-perl,


=====================================
debian/patches/new-bioperl-require.patch
=====================================
@@ -0,0 +1,14 @@
+Description: use new-style BioPerl include
+Author: Sascha Steinbiss <satta at debian.org>
+Last-Update: 2019-06-08
+--- a/lib/Bio/Roary.pm
++++ b/lib/Bio/Roary.pm
+@@ -10,7 +10,7 @@
+ 
+ use Moose;
+ use File::Copy;
+-use Bio::Perl;
++use BioPerl;
+ use Bio::Roary::ParallelAllAgainstAllBlast;
+ use Bio::Roary::CombinedProteome;
+ use Bio::Roary::External::Cdhit;


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 rename_R_script.patch
 use-dz-starter.patch
 use-debian-perl-path.patch
+new-bioperl-require.patch



View it on GitLab: https://salsa.debian.org/med-team/roary/commit/5c5a8b4ad7085f4574a183fdb2f66aef0f2027bb

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View it on GitLab: https://salsa.debian.org/med-team/roary/commit/5c5a8b4ad7085f4574a183fdb2f66aef0f2027bb
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