[med-svn] [Git][med-team/bcbio][master] Wording, Steffen revisits seqcluster

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
a785f732 by Steffen Möller at 2019-06-19T22:28:49Z
Wording, Steffen revisits seqcluster

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -2,11 +2,15 @@ TODO for bcbio with Debian
 ==========================
 
 The following is a list of packages that are used by at least one of the
-workflows it aggregates. A complete coverage by Debian of all these tools
+workflows bcbio aggregates. A complete coverage by Debian of all these tools
 seems increasingly unlikely - their packaging would take longer than the
-tools scientific lifespan, i.e. there is a new generation of problem solving
+tools' scientific lifespan, i.e. there is a new generation of problem solving
 emerging and/or the workflow as a whole will have mutated in the meantime.
 
+We yet have to find an answer to this challenge. For quite some this is to
+just go and use Conda. We should also consider mixing Conda with Debian,
+though. But let us first see where we are with bcbio:
+
 Packages already accepted
 ------------------------
 
@@ -64,6 +68,7 @@ package seqcluster
       Some nitty-gritty was going on there wrt Python3 transition
       and an upcoming new release. Needs another review and
       likely some communication with upstream.
+         Steffen addresses this.
 
 
 Packages presumed easy to package
@@ -87,8 +92,8 @@ Package MutliQC - in salsa
 
 
 
-Packages of importance for basic NGS workflow well beyond bcbio
----------------------------------------------------------------
+Packages of importance for basic NGS workflows with motivation beyond bcbio
+---------------------------------------------------------------------------
 
 package mosdepth
   https://salsa.debian.org/med-team/mosdepth



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/a785f732a7d94ddc1c350a36736216724fab29d3

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/a785f732a7d94ddc1c350a36736216724fab29d3
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