[med-svn] [Git][med-team/python-dnaio][master] Add an autopkgtest

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / python-dnaio


Commits:
e1c180ad by Liubov Chuprikova at 2019-06-24T21:36:53Z
Add an autopkgtest

- - - - -


2 changed files:

- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @
+Depends: @, unicycler-data
 Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,18 +1,40 @@
 #!/bin/bash
 set -e
 
-pkg=#PACKAGENAME#
+test_pkg=dnaio
+# using these data for testing
+source_pkg=unicycler-data
 
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
-  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  # Double quote below to expand the temporary directory variable now versus
-  # later is on purpose.
-  # shellcheck disable=SC2064
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${test_pkg}-test.XXXXXX)
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+if [ -d /usr/share/${source_pkg}/sample_data ] ; then
+  cp -a /usr/share/${source_pkg}/sample_data/ ${AUTOPKGTEST_TMP}
+else
+  echo "Please install package unicycler-data to run this script"
+  exit 1
+fi
+
+cd ${AUTOPKGTEST_TMP}
+
+cat > simple_test.py << EOL
+import os
+import dnaio
+
+dir = 'sample_data'
+
+for filename in os.listdir(dir):
+    print(filename)
+    with dnaio.open(dir + '/' + filename) as inf:
+        bp = 0
+        for record in inf:
+            bp += len(record)
+    print(f'The input file contains {bp/1E6:.1f} Mbp')
+EOL
 
-cd "${AUTOPKGTEST_TMP}"
+# run test
+python3 ./simple_test.py
 
-#do_stuff_to_test_package#
+echo "PASS"



View it on GitLab: https://salsa.debian.org/med-team/python-dnaio/commit/e1c180adebc4f5d9a8fa682d81b0f627ec78a7b2

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View it on GitLab: https://salsa.debian.org/med-team/python-dnaio/commit/e1c180adebc4f5d9a8fa682d81b0f627ec78a7b2
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