[med-svn] [Git][med-team/bcbio][master] r-bioc-DEGreport - all pre-depends except edgeR are in new

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bcbio


Commits:
1b6ac364 by Andreas Tille at 2019-06-26T07:00:06Z
r-bioc-DEGreport - all pre-depends except edgeR are in new

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -85,10 +85,10 @@ package seqcluster
        # We cover all CRAN packages
        # Most BioC packages are missing - even edgeR ? :
        r-bioc-edgeR - missing
-       r-bioc-HTSFilter - Andreas volunteering
-       r-bioc-DEGreport - Andreas volunteering
+       r-bioc-HTSFilter - Depends DESeq and edgeR which both in turn depend locfit which makes all non-free
+       r-bioc-DEGreport - all pre-depends except edgeR are in new
        # novel packages
-       install.github("hbc/CHBUtils") - missing
+       install.github("hbc/CHBUtils") - Andreas volunteering
        install.github("lpantano/isomiRs", "master") - missing
        install_github('rstudio/rmarkdown')  -- this may be the same we have from CRAN - not checked
 



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/1b6ac36472207f7ca572d0e110c9b14d8819f5ee

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/1b6ac36472207f7ca572d0e110c9b14d8819f5ee
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