[med-svn] [Git][med-team/bcbio][master] update seqcluster loses amcharts

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
ec6be756 by Steffen Möller at 2019-06-27T10:58:04Z
update seqcluster loses amcharts

- - - - -


1 changed file:

- debian/TODO


Changes:

=====================================
debian/TODO
=====================================
@@ -75,7 +75,7 @@ package seqcluster
        ./.travis.yml:- conda install --yes -c conda-forge -c bioconda memory_profiler openjdk pysam pybedtools pandas numpy biopython progressbar2 pyyaml bedtools samtools mirtop viennarna -q
       so, for some successful testing it seems like we need viennarna, still. That is not yet in the distribution. If truly dependending on it then bcbio ends up in contrib.
 
-     seqcluster redistributes a "Free as in beer" graph library in its source tree at ./misc/js/amcharts.js that upstream accepts to be substituted with references to the online location in a CDN.  Steffen will address that. Downside of it all: seqcluster needs to go to contrib.
+     seqcluster accepted a patch to eliminate a "Free as in beer" graph library from its source tree at ./misc/js/amcharts.js. These are now references to the online location in a CDN.
 
      Additional requirements:
       python3-dateutils (not yet packaged)
@@ -113,6 +113,7 @@ package Scribl
   http://chmille4.github.io/Scribl/
     A surprisingly neat JavaScript library to show genomic features
        Needed for seqcluster
+    Steffen addresses packaging this JS library from 2012
 
 package gjh_asl_json
   https://github.com/ghackebeil/gjh_asl_json



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/ec6be7565d7ee33bca8bb1203e654049e4e1f2f8

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/ec6be7565d7ee33bca8bb1203e654049e4e1f2f8
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