[med-svn] [Git][med-team/libbpp-seq][master] 3 commits: Rebuild for new version of gcc to fix symbols

Andreas Tille gitlab at salsa.debian.org
Thu Mar 7 18:08:19 GMT 2019 

Andreas Tille pushed to branch master at Debian Med / libbpp-seq


Commits:
88891aa7 by Andreas Tille at 2019-03-07T17:55:02Z
Rebuild for new version of gcc to fix symbols

- - - - -
eb616598 by Andreas Tille at 2019-03-07T17:56:10Z
Standards-Version: 4.3.0

- - - - -
bb6ce1c2 by Andreas Tille at 2019-03-07T17:58:43Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/libbpp-seq12.symbols


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+libbpp-seq (2.4.1-3) unstable; urgency=medium
+
+  * Rebuild for new version of gcc to fix symbols
+    Closes: #923954
+  * Standards-Version: 4.3.0
+
+ -- Andreas Tille <tille at debian.org>  Thu, 07 Mar 2019 18:56:16 +0100
+
 libbpp-seq (2.4.1-2) unstable; urgency=medium
 
   [ Jelmer Vernooij ]


=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 11~),
                cmake,
                d-shlibs (>= 0.80),
                libbpp-core-dev (>= 2.4.1)
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page


=====================================
debian/libbpp-seq12.symbols
=====================================
@@ -328,7 +328,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZN3bpp16AbstractAlphabet8getStateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
  _ZN3bpp16AbstractAlphabet8getStateEi at Base 2.4.1
  _ZN3bpp16AbstractAlphabet8setStateEmPNS_13AlphabetStateE at Base 2.4.1
- _ZN3bpp16AbstractAlphabetC2ERKS0_ at Base 2.4.1
  _ZN3bpp16AbstractAlphabetD2Ev at Base 2.4.1
  _ZN3bpp16AbstractCoreSite11setPositionEi at Base 2.4.1
  _ZN3bpp16ApplicationTools12getParameterIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi at Base 2.4.1
@@ -1710,13 +1709,13 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZNKSt5ctypeIcE8do_widenEc at Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
+ _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
+ _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEE17_M_initialize_mapEm at Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEED1Ev at Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEED2Ev at Base 2.4.1
  _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_ at Base 2.4.1
- _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixERS9_ at Base 2.4.1
- _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorImSaImEESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_ at Base 2.4.1
  _ZNSt3mapIiiSt4lessIiESaISt4pairIKiiEEEixEOi at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
@@ -1813,7 +1812,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE11equal_rangeERS7_ at Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E at Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSJ_PSt13_Rb_tree_nodeISB_E at Base 2.4.1
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueIS6_IS5_SA_EEES6_ISt17_Rb_tree_iteratorISB_EbEOT_ at Base 2.4.1
  (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_emplace_uniqueIJS6_IS5_SA_EEEES6_ISt17_Rb_tree_iteratorISB_EbEDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_ at Base 2.4.1
@@ -1851,6 +1849,7 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
+ _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_ at Base 2.4.1
@@ -1873,6 +1872,7 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E at Base 2.4.1
+ _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
@@ -1884,10 +1884,10 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E at Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E at Base 2.4.1
+ _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 2.4.1
- _ZSt11__remove_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_ at Base 2.4.1
  _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElS5_NS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_T0_SH_T1_T2_ at Base 2.4.1
  _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEENS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_ at Base 2.4.1
  _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_ at Base 2.4.1
@@ -2460,7 +2460,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
  _ZTVN3bpp7ClustalE at Base 2.4.1
  _ZTVN3bpp7GenBankE at Base 2.4.1
  _ZTVN3bpp8BLOSUM50E at Base 2.4.1
- _ZTVN3bpp8ClonableE at Base 2.4.1
  _ZTVN3bpp8DNAToRNAE at Base 2.4.1
  _ZTVN3bpp8PhredPhdE at Base 2.4.1
  _ZTVN3bpp9PhredPolyE at Base 2.4.1



View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/compare/41ce977cf4c21afa8bbd8463ed7e1d782ea3082d...bb6ce1c285bfecd3fda5c0ab4156325cfc6f7f16

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/compare/41ce977cf4c21afa8bbd8463ed7e1d782ea3082d...bb6ce1c285bfecd3fda5c0ab4156325cfc6f7f16
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