[med-svn] [Git][med-team/bbmap][master] 2 commits: Enable debug symbols

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bbmap


Commits:
3f489c60 by Andreas Tille at 2019-03-25T12:22:00Z
Enable debug symbols

- - - - -
3af0c7e2 by Andreas Tille at 2019-03-25T12:22:23Z
Spelling

- - - - -


4 changed files:

- debian/control
- + debian/patches/debug_symbols.patch
- + debian/patches/series
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -46,5 +46,5 @@ Description: short read aligner and other bioinformatic tools - JNI library
  PacBio, 454, and other reads; very high sensitivity and tolerant of
  errors and numerous large indels.
  .
- This package contains the architecture dependant library for the bbmap
+ This package contains the architecture dependent library for the bbmap
  tools.


=====================================
debian/patches/debug_symbols.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 25 Mar 2019 09:54:19 +0100
+Description: Enable debug symbols
+
+--- a/jni/makefile.linux
++++ b/jni/makefile.linux
+@@ -1,7 +1,7 @@
+ CC=gcc
+ INCS=-I"$(JAVA_HOME)/include" -I"$(JAVA_HOME)/include/linux"
+-CFLAGS=-O3 -Wall -std=c99 -fPIC
+-LDFLAGS=-O3 -Wall -std=c99 -fPIC -shared
++CFLAGS+=-O3 -Wall -std=c99 -fPIC
++LDFLAGS+=-O3 -Wall -std=c99 -fPIC -shared
+ OBJ=BandedAlignerJNI.o MultiStateAligner11tsJNI.o BBMergeOverlapper.o
+ 
+ %.o: %.c


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+debug_symbols.patch


=====================================
debian/rules
=====================================
@@ -40,7 +40,4 @@ override_dh_install:
 
 override_dh_fixperms:
 	dh_fixperms
-	chmod -x $(PKGBINDIR)/*
-
-override_dh_dwz:
-	echo "Dothing to prevent error: dwz -q -- debian/bbmap-jni/usr/lib/jni/libbbtoolsjni.so returned exit code 1"
+	chmod +x $(PKGBINDIR)/*



View it on GitLab: https://salsa.debian.org/med-team/bbmap/compare/fa939a6074d8f5d01bfc65cd74027503361e06c2...3af0c7e2ae7e8fa2bc6625074ffc8b53ef0ca72e

-- 
View it on GitLab: https://salsa.debian.org/med-team/bbmap/compare/fa939a6074d8f5d01bfc65cd74027503361e06c2...3af0c7e2ae7e8fa2bc6625074ffc8b53ef0ca72e
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