[med-svn] [Git][med-team/q2-alignment][master] Add publication and some other changes

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / q2-alignment


Commits:
7cd389f5 by Liubov Chuprikova at 2019-03-25T18:49:52Z
Add publication and some other changes

- - - - -


4 changed files:

- debian/control
- − debian/lintian-overrides
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/control
=====================================
@@ -7,6 +7,7 @@ Build-Depends: debhelper (>= 12~),
                dh-python,
                python3,
                python3-setuptools,
+               python3-skbio,
                qiime
 Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment
@@ -21,8 +22,6 @@ Depends: ${shlibs:Depends},
          python3-setuptools,
          python3-skbio,
          qiime,
-         q2-types  # TODO
-         mafft,
-         sina    # TODO
+         mafft
 Description: QIIME 2 plugin for generating and manipulating alignments
  <long_description>


=====================================
debian/lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-# see https://lists.debian.org/debian-med/2018/06/msg00043.html
-#PKGNAME#: script-with-language-extension usr/bin/*.*


=====================================
debian/rules
=====================================
@@ -18,7 +18,7 @@ include /usr/share/dpkg/default.mk
 # export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
-	dh $@
+	dh $@ --with python3 --buildsystem=pybuild
 
 ### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
 #override_dh_auto_test:


=====================================
debian/upstream/metadata
=====================================
@@ -1,12 +1,40 @@
 Reference:
-  Author: 
-  Title: 
-  Journal: 
-  Year: 
-  Volume: 
-  Number: 
-  Pages: 
-  DOI: 
-  PMID:
-  URL: 
-  eprint: 
+  Author: >
+    Evan Bolyen and Jai Ram Rideout and Matthew R Dillon and Nicholas A
+    Bokulich and Christian Abnet and Gabriel A Al-Ghalith and Harriet Alexander and
+    Eric J Alm and Manimozhiyan Arumugam and Francesco Asnicar and Yang Bai and
+    Jordan E Bisanz and Kyle Bittinger and Asker Brejnrod and Colin J Brislawn and
+    C Titus Brown and Benjamin J Callahan and Andrés Mauricio Caraballo-Rodríguez
+    and John Chase and Emily Cope and Ricardo Da Silva and Pieter C Dorrestein and
+    Gavin M Douglas and Daniel M Durall and Claire Duvallet and Christian F
+    Edwardson and Madeleine Ernst and Mehrbod Estaki and Jennifer Fouquier and
+    Julia M Gauglitz and Deanna L Gibson and Antonio Gonzalez and Kestrel Gorlick
+    and Jiarong Guo and Benjamin Hillmann and Susan Holmes and Hannes Holste and
+    Curtis Huttenhower and Gavin Huttley and Stefan Janssen and Alan K Jarmusch and
+    Lingjing Jiang and Benjamin Kaehler and Kyo Bin Kang and Christopher R Keefe
+    and Paul Keim and Scott T Kelley and Dan Knights and Irina Koester and Tomasz
+    Kosciolek and Jorden Kreps and Morgan GI Langille and Joslynn Lee and Ruth Ley
+    and Yong-Xin Liu and Erikka Loftfield and Catherine Lozupone and Massoud Maher
+    and Clarisse Marotz and Bryan D Martin and Daniel McDonald and Lauren J McIver
+    and Alexey V Melnik and Jessica L Metcalf and Sydney C Morgan and Jamie Morton
+    and Ahmad Turan Naimey and Jose A Navas-Molina and Louis Felix Nothias and
+    Stephanie B Orchanian and Talima Pearson and Samuel L Peoples and Daniel Petras
+    and Mary Lai Preuss and Elmar Pruesse and Lasse Buur Rasmussen and Adam Rivers
+    and Michael S Robeson and Patrick Rosenthal and Nicola Segata and Michael
+    Shaffer and Arron Shiffer and Rashmi Sinha and Se Jin Song and John R Spear and
+    Austin D Swafford and Luke R Thompson and Pedro J Torres and Pauline Trinh and
+    Anupriya Tripathi and Peter J Turnbaugh and Sabah Ul-Hasan and Justin JJ van
+    der Hooft and Fernando Vargas and Yoshiki Vázquez-Baeza and Emily Vogtmann and
+    Max von Hippel and William Walters and Yunhu Wan and Mingxun Wang and Jonathan
+    Warren and Kyle C Weber and Chase HD Williamson and Amy D Willis and Zhenjiang
+    Zech Xu and Jesse R Zaneveld and Yilong Zhang and Qiyun Zhu and Rob Knight and
+    J Gregory Caporaso
+  Title: >
+    QIIME 2: Reproducible, interactive, scalable, and extensible microbiome
+    data science
+  Journal: PeerJ Preprints
+  Year: 2018
+  Volume: 6
+  DOI: 10.7287/peerj.preprints.27295v2
+  URL: https://peerj.com/preprints/27295/
+  eprint: https://peerj.com/preprints/27295.pdf



View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/commit/7cd389f52d6cfa27a8985e77e8f44bbf9a2c07f7

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View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/commit/7cd389f52d6cfa27a8985e77e8f44bbf9a2c07f7
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